The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae)
Plastid genomes are useful markers in resolving plant phylogenetic relationships for various taxonomic groups. Here, we sequenced and de novo assembled the complete plastid genome sequence of the fern Asplenium tenerum Forst. (Aspleniaceae, Polypodiales) using the genome skimming data. The newly gen...
Gespeichert in:
| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-07, Vol.5 (3), p.3743-3745 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 3745 |
|---|---|
| container_issue | 3 |
| container_start_page | 3743 |
| container_title | Mitochondrial DNA. Part B. Resources |
| container_volume | 5 |
| creator | Peng, Yang Zhang, Suzhou Dong, Shanshan Peng, Tao |
| description | Plastid genomes are useful markers in resolving plant phylogenetic relationships for various taxonomic groups. Here, we sequenced and de novo assembled the complete plastid genome sequence of the fern Asplenium tenerum Forst. (Aspleniaceae, Polypodiales) using the genome skimming data. The newly generated plastid genome is conserved in structure and gene content compared with that of closely related species. Plastid phylogenetic analysis of Polypodiales ferns recovered a robust phylogeny, supporting the close relationship of A. tenerum with Asplenium prolongatum. |
| doi_str_mv | 10.1080/23802359.2020.1831985 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1080_23802359_2020_1831985</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_0b016d0b0c9c46e4b7124618497b2315</doaj_id><sourcerecordid>2522514151</sourcerecordid><originalsourceid>FETCH-LOGICAL-c510t-96540639782372fefac74a08e645a160fc91215243e76a3d60c48f9373a134883</originalsourceid><addsrcrecordid>eNp9kU1vEzEQhlcIRKvSnwBaiUs5pHj87QuiqvioFIlLOVuOd5xstGsHe1PUf4-XpFXLgYtnNPPMa4_fpnkL5BKIJh8p04QyYS4pobWkGRgtXjSnc30xN14-yU-a81K2hBCQTCmjXjcnjDGpiIHTZnm7wdancTfgVJPNkHLaDa5M7RpjGrFNoZ0qEjDH9qpULPb7sZ0wYq7x4lhyHh1-eNO8Cm4oeH6MZ83Pr19ur78vlj--3VxfLRdeAJkWRgpOJDNKU6ZowOC84o5olFw4kCR4AxQE5QyVdKyTxHMdDFPMAeNas7Pm5qDbJbe1u9yPLt_b5Hr7t5Dy2ro89X5AS1Z17a6e3nguka8UUC5Bc6NWlIGoWp8OWrv9asTOY5yyG56JPu_EfmPX6c4qqUAqVQUujgI5_dpjmezYF4_D4CKmfbGUK8ZBUgUVff8Puk37HOtXWSooFcBBzJQ4UD6nUjKGx8cAsbP99sF-O9tvj_bXuXdPN3mcejC7Ap8PQB9DyqP7nfLQ2cndV9NDdtH3xbL_3_EHGeC7qw</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2522514151</pqid></control><display><type>article</type><title>The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Peng, Yang ; Zhang, Suzhou ; Dong, Shanshan ; Peng, Tao</creator><creatorcontrib>Peng, Yang ; Zhang, Suzhou ; Dong, Shanshan ; Peng, Tao</creatorcontrib><description>Plastid genomes are useful markers in resolving plant phylogenetic relationships for various taxonomic groups. Here, we sequenced and de novo assembled the complete plastid genome sequence of the fern Asplenium tenerum Forst. (Aspleniaceae, Polypodiales) using the genome skimming data. The newly generated plastid genome is conserved in structure and gene content compared with that of closely related species. Plastid phylogenetic analysis of Polypodiales ferns recovered a robust phylogeny, supporting the close relationship of A. tenerum with Asplenium prolongatum.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1831985</identifier><identifier>PMID: 33367091</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Aspleniaceae ; Asplenium ; Asplenium tenerum ; Chloroplasts ; Ferns ; Genomes ; Mitogenome Announcement ; Nucleotide sequence ; Phylogenetics ; Phylogeny ; Plastome ; Polypodiales</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.3743-3745</ispartof><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-96540639782372fefac74a08e645a160fc91215243e76a3d60c48f9373a134883</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671677/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671677/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2100,27500,27922,27923,53789,53791,59141,59142</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33367091$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Peng, Yang</creatorcontrib><creatorcontrib>Zhang, Suzhou</creatorcontrib><creatorcontrib>Dong, Shanshan</creatorcontrib><creatorcontrib>Peng, Tao</creatorcontrib><title>The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Plastid genomes are useful markers in resolving plant phylogenetic relationships for various taxonomic groups. Here, we sequenced and de novo assembled the complete plastid genome sequence of the fern Asplenium tenerum Forst. (Aspleniaceae, Polypodiales) using the genome skimming data. The newly generated plastid genome is conserved in structure and gene content compared with that of closely related species. Plastid phylogenetic analysis of Polypodiales ferns recovered a robust phylogeny, supporting the close relationship of A. tenerum with Asplenium prolongatum.</description><subject>Aspleniaceae</subject><subject>Asplenium</subject><subject>Asplenium tenerum</subject><subject>Chloroplasts</subject><subject>Ferns</subject><subject>Genomes</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plastome</subject><subject>Polypodiales</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU1vEzEQhlcIRKvSnwBaiUs5pHj87QuiqvioFIlLOVuOd5xstGsHe1PUf4-XpFXLgYtnNPPMa4_fpnkL5BKIJh8p04QyYS4pobWkGRgtXjSnc30xN14-yU-a81K2hBCQTCmjXjcnjDGpiIHTZnm7wdancTfgVJPNkHLaDa5M7RpjGrFNoZ0qEjDH9qpULPb7sZ0wYq7x4lhyHh1-eNO8Cm4oeH6MZ83Pr19ur78vlj--3VxfLRdeAJkWRgpOJDNKU6ZowOC84o5olFw4kCR4AxQE5QyVdKyTxHMdDFPMAeNas7Pm5qDbJbe1u9yPLt_b5Hr7t5Dy2ro89X5AS1Z17a6e3nguka8UUC5Bc6NWlIGoWp8OWrv9asTOY5yyG56JPu_EfmPX6c4qqUAqVQUujgI5_dpjmezYF4_D4CKmfbGUK8ZBUgUVff8Puk37HOtXWSooFcBBzJQ4UD6nUjKGx8cAsbP99sF-O9tvj_bXuXdPN3mcejC7Ap8PQB9DyqP7nfLQ2cndV9NDdtH3xbL_3_EHGeC7qw</recordid><startdate>20200702</startdate><enddate>20200702</enddate><creator>Peng, Yang</creator><creator>Zhang, Suzhou</creator><creator>Dong, Shanshan</creator><creator>Peng, Tao</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20200702</creationdate><title>The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae)</title><author>Peng, Yang ; Zhang, Suzhou ; Dong, Shanshan ; Peng, Tao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-96540639782372fefac74a08e645a160fc91215243e76a3d60c48f9373a134883</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Aspleniaceae</topic><topic>Asplenium</topic><topic>Asplenium tenerum</topic><topic>Chloroplasts</topic><topic>Ferns</topic><topic>Genomes</topic><topic>Mitogenome Announcement</topic><topic>Nucleotide sequence</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plastome</topic><topic>Polypodiales</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Peng, Yang</creatorcontrib><creatorcontrib>Zhang, Suzhou</creatorcontrib><creatorcontrib>Dong, Shanshan</creatorcontrib><creatorcontrib>Peng, Tao</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Peng, Yang</au><au>Zhang, Suzhou</au><au>Dong, Shanshan</au><au>Peng, Tao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2020-07-02</date><risdate>2020</risdate><volume>5</volume><issue>3</issue><spage>3743</spage><epage>3745</epage><pages>3743-3745</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Plastid genomes are useful markers in resolving plant phylogenetic relationships for various taxonomic groups. Here, we sequenced and de novo assembled the complete plastid genome sequence of the fern Asplenium tenerum Forst. (Aspleniaceae, Polypodiales) using the genome skimming data. The newly generated plastid genome is conserved in structure and gene content compared with that of closely related species. Plastid phylogenetic analysis of Polypodiales ferns recovered a robust phylogeny, supporting the close relationship of A. tenerum with Asplenium prolongatum.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33367091</pmid><doi>10.1080/23802359.2020.1831985</doi><tpages>3</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2380-2359 |
| ispartof | Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.3743-3745 |
| issn | 2380-2359 2380-2359 |
| language | eng |
| recordid | cdi_crossref_primary_10_1080_23802359_2020_1831985 |
| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Aspleniaceae Asplenium Asplenium tenerum Chloroplasts Ferns Genomes Mitogenome Announcement Nucleotide sequence Phylogenetics Phylogeny Plastome Polypodiales |
| title | The complete chloroplast genome of the fern Asplenium tenerum (Aspleniaceae) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-09T22%3A36%3A13IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20complete%20chloroplast%20genome%20of%20the%20fern%20Asplenium%20tenerum%20(Aspleniaceae)&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Peng,%20Yang&rft.date=2020-07-02&rft.volume=5&rft.issue=3&rft.spage=3743&rft.epage=3745&rft.pages=3743-3745&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2020.1831985&rft_dat=%3Cproquest_cross%3E2522514151%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2522514151&rft_id=info:pmid/33367091&rft_doaj_id=oai_doaj_org_article_0b016d0b0c9c46e4b7124618497b2315&rfr_iscdi=true |