Characterization of the complete mitochondrial genome of Bothrocara hollandi (Perciformes: Zoarcidae)
The full mitogenome of Bothrocara hollandi was determined by high-throughput sequencing (HTS) platform. The genome was 16,732 bp in length, which included 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S), and a control region (D-Loop). The overall composition of G + C in the mitog...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-01, Vol.4 (1), p.523-524 |
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| creator | Kim, Nack-Keun Andriyono, Sapto Alam, Jobaidul Kim, Sung-Tae Jung, Kyung Mi Kim, Hyun-Woo |
| description | The full mitogenome of Bothrocara hollandi was determined by high-throughput sequencing (HTS) platform. The genome was 16,732 bp in length, which included 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S), and a control region (D-Loop). The overall composition of G + C in the mitogenome was 45.90%, which was lower than A + T contents (54.10%). Except for COX1 (GTG), the other twelve protein-coding genes begin with typical start codon, ATG. The incomplete stop codon (TA − or T-) was identified in five genes, including COXI, COXII, COXIII, ND3, and ND4. The phylogenetic analysis with the currently reported mitogenome sequences showed that B. hollandi was most closely related to Lycodes tanakae, suggesting that additional mitogenome sequences in genus Bothrocara are required for its clear evolutional relationship. |
| doi_str_mv | 10.1080/23802359.2018.1551089 |
| format | Article |
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The genome was 16,732 bp in length, which included 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S), and a control region (D-Loop). The overall composition of G + C in the mitogenome was 45.90%, which was lower than A + T contents (54.10%). Except for COX1 (GTG), the other twelve protein-coding genes begin with typical start codon, ATG. The incomplete stop codon (TA − or T-) was identified in five genes, including COXI, COXII, COXIII, ND3, and ND4. The phylogenetic analysis with the currently reported mitogenome sequences showed that B. hollandi was most closely related to Lycodes tanakae, suggesting that additional mitogenome sequences in genus Bothrocara are required for its clear evolutional relationship.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1551089</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Bothrocara hollandi ; eelpout ; Genomes ; High-throughput sequencing ; Mitochondria ; mitogenome ; Next-generation sequencing ; phylogenetic ; Phylogeny ; Stop codon</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.523-524</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). 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The phylogenetic analysis with the currently reported mitogenome sequences showed that B. hollandi was most closely related to Lycodes tanakae, suggesting that additional mitogenome sequences in genus Bothrocara are required for its clear evolutional relationship.</description><subject>Bothrocara hollandi</subject><subject>eelpout</subject><subject>Genomes</subject><subject>High-throughput sequencing</subject><subject>Mitochondria</subject><subject>mitogenome</subject><subject>Next-generation sequencing</subject><subject>phylogenetic</subject><subject>Phylogeny</subject><subject>Stop codon</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kUFv1DAQhSMEUqvSn1ApEhd62K0dx3bCqWUFpVIlOMCFizVrTxqvksx24gqVX4_DFtRTT7af33y23iuKMynWUjTiolKNqJRu15WQzVpqndX2VXG86Kvl4vWz_VFxOs87IYQ0ytrWHhe46YHBJ-T4G1KkqaSuTD2Wnsb9gAnLMSbyPU2BIwzlHU404mL6SKln8nm67GkYYAqxfP8N2ceOeMT5Q_mTIJ8C4Pnb4k0Hw4ynT-tJ8ePzp--bL6vbr9c3m6vbla-1TCtUWm1rQGlqpStvwTSyM1JIaYW3srE6gEWoTVWZ2ppadyoY25qtFrXvtFUnxc2BGwh2bs9xBH50BNH9FYjvHHCKfkDXquC3wlgTtm1mNWCtamST4b7SqNrMendg7ZnuH3BObkcPPOXvuxxlJXKmWmeXPrg80zwzdv9flcItBbl_BbmlIPdUUJ67PMzFaYkLfhEPwSV4HIg7hsnH2amXEX8Ag0iVYw</recordid><startdate>20190102</startdate><enddate>20190102</enddate><creator>Kim, Nack-Keun</creator><creator>Andriyono, Sapto</creator><creator>Alam, Jobaidul</creator><creator>Kim, Sung-Tae</creator><creator>Jung, Kyung Mi</creator><creator>Kim, Hyun-Woo</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-2566-1636</orcidid><orcidid>https://orcid.org/0000-0003-1357-5893</orcidid></search><sort><creationdate>20190102</creationdate><title>Characterization of the complete mitochondrial genome of Bothrocara hollandi (Perciformes: Zoarcidae)</title><author>Kim, Nack-Keun ; 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Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Nack-Keun</au><au>Andriyono, Sapto</au><au>Alam, Jobaidul</au><au>Kim, Sung-Tae</au><au>Jung, Kyung Mi</au><au>Kim, Hyun-Woo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the complete mitochondrial genome of Bothrocara hollandi (Perciformes: Zoarcidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><date>2019-01-02</date><risdate>2019</risdate><volume>4</volume><issue>1</issue><spage>523</spage><epage>524</epage><pages>523-524</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>The full mitogenome of Bothrocara hollandi was determined by high-throughput sequencing (HTS) platform. The genome was 16,732 bp in length, which included 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S), and a control region (D-Loop). The overall composition of G + C in the mitogenome was 45.90%, which was lower than A + T contents (54.10%). Except for COX1 (GTG), the other twelve protein-coding genes begin with typical start codon, ATG. The incomplete stop codon (TA − or T-) was identified in five genes, including COXI, COXII, COXIII, ND3, and ND4. The phylogenetic analysis with the currently reported mitogenome sequences showed that B. hollandi was most closely related to Lycodes tanakae, suggesting that additional mitogenome sequences in genus Bothrocara are required for its clear evolutional relationship.</abstract><cop>Abingdon</cop><pub>Taylor & Francis</pub><doi>10.1080/23802359.2018.1551089</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0002-2566-1636</orcidid><orcidid>https://orcid.org/0000-0003-1357-5893</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Bothrocara hollandi eelpout Genomes High-throughput sequencing Mitochondria mitogenome Next-generation sequencing phylogenetic Phylogeny Stop codon |
| title | Characterization of the complete mitochondrial genome of Bothrocara hollandi (Perciformes: Zoarcidae) |
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