Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)
Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collect...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-01, Vol.4 (1), p.176-177 |
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| creator | Jeon, Jae-Hyeon Park, Hyun-Seung Park, Jee Young Kang, Tae Sun Kwon, Kisung Kim, Yeon Bok Han, Jong-Won Kim, Seung Hyun Sung, Sang Hyun Yang, Tae-Jin |
| description | Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species. |
| doi_str_mv | 10.1080/23802359.2018.1545529 |
| format | Article |
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In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1545529</identifier><language>eng</language><publisher>Abingdon: Taylor & Francis</publisher><subject>Biodiversity ; chloroplast genome ; Chloroplasts ; Genomes ; Medicinal plants ; Nucleotide sequence ; Orobanchaceae ; Phylogeny ; Rehmannia glutinosa ; rRNA ; Single-nucleotide polymorphism ; Species diversity ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.176-177</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Part B. Resources</title><description>Rehmannia glutinosa is a plant used as traditional medicine for its various tonic effects in Korea and China. In this study, chloroplast genomes of two R. glutinosa were completed by de novo assembly using whole-genome Illumina sequence data. The length of chloroplast genomes of R. glutinosa collected from China and Korea was 153,680 bp and 153,499 bp, respectively. A total of 114 coding regions were predicted in both R. glutinosa including 80 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. We identified abundant intra-species diversity of 87 InDels and 147 SNPs, among three R. glutinosa chloroplast genome sequences including one from GenBank. The phylogenetic analysis showed that these R. glutinosa were closely clustered with related Rehmannia species, separated from other Orobanchaceae and Scrophulariaceae species.</description><subject>Biodiversity</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Medicinal plants</subject><subject>Nucleotide sequence</subject><subject>Orobanchaceae</subject><subject>Phylogeny</subject><subject>Rehmannia glutinosa</subject><subject>rRNA</subject><subject>Single-nucleotide polymorphism</subject><subject>Species diversity</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU9r3DAQxU1poSHJRygIemkP3kiWJUu3ltA_gUCgpGcxlka7WmzJlbwN--2r7aalp54k3sw8ad6vad4wumFU0ZuOK9pxoTcdZWrDRC9Ep180Fye9PRVe_nN_3VyXsqeUMsmHQQ8Xzfz4lIhN8zLhisTuppTTMkFZyRZjmpEU_HHAaLEQiI6EuGZoy4I2VMWFn5hLWI_Ep0y-4W6GGAOQ7XRYQ0wFyLuHnEaIdgcWAd9fNa88TAWvn8_L5vvnT4-3X9v7hy93tx_vW9sLtrZ60N7iwIWXVAxy1AhgBXg-aqdGhZQr5rRkWkqhHGe9rhsJYFJQLb21_LK5O_u6BHuz5DBDPpoEwfwWUt4ayGuwExrndOdBWaYZ7aG6aE4lU4P1vRoEjtXr7dlryalGUVazT4cc6_dNjbSjXPeU1i5x7rI5lZLR_32VUXMCZf6AMidQ5hlUnftwnguxZjjDU8qTMyscKwifa3KhGP5_i18Ec5n-</recordid><startdate>20190102</startdate><enddate>20190102</enddate><creator>Jeon, Jae-Hyeon</creator><creator>Park, Hyun-Seung</creator><creator>Park, Jee Young</creator><creator>Kang, Tae Sun</creator><creator>Kwon, Kisung</creator><creator>Kim, Yeon Bok</creator><creator>Han, Jong-Won</creator><creator>Kim, Seung Hyun</creator><creator>Sung, Sang Hyun</creator><creator>Yang, Tae-Jin</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope></search><sort><creationdate>20190102</creationdate><title>Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)</title><author>Jeon, Jae-Hyeon ; Park, Hyun-Seung ; Park, Jee Young ; Kang, Tae Sun ; Kwon, Kisung ; Kim, Yeon Bok ; Han, Jong-Won ; Kim, Seung Hyun ; Sung, Sang Hyun ; Yang, Tae-Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-979fce735f60576b9eaac5af3b9d8b8e0381d96196658d31490015a165096fcc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Biodiversity</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Genomes</topic><topic>Medicinal plants</topic><topic>Nucleotide sequence</topic><topic>Orobanchaceae</topic><topic>Phylogeny</topic><topic>Rehmannia glutinosa</topic><topic>rRNA</topic><topic>Single-nucleotide polymorphism</topic><topic>Species diversity</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jeon, Jae-Hyeon</creatorcontrib><creatorcontrib>Park, Hyun-Seung</creatorcontrib><creatorcontrib>Park, Jee Young</creatorcontrib><creatorcontrib>Kang, Tae Sun</creatorcontrib><creatorcontrib>Kwon, Kisung</creatorcontrib><creatorcontrib>Kim, Yeon Bok</creatorcontrib><creatorcontrib>Han, Jong-Won</creatorcontrib><creatorcontrib>Kim, Seung Hyun</creatorcontrib><creatorcontrib>Sung, Sang Hyun</creatorcontrib><creatorcontrib>Yang, Tae-Jin</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | Biodiversity chloroplast genome Chloroplasts Genomes Medicinal plants Nucleotide sequence Orobanchaceae Phylogeny Rehmannia glutinosa rRNA Single-nucleotide polymorphism Species diversity tRNA |
| title | Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae) |
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