Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents
A homothallic semipapillate slow growing Phytophthora species associated with root rot of strawberries from greenhouse-grown plants in North Carolina, USA, root rot of roses in the Netherlands, and root rot of raspberry in Knoxfield, Australia, was identified. The main character of this organism is...
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| Veröffentlicht in: | Mycologia 2008, Vol.100 (1), p.99-110 |
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| creator | Abad, Z.G Coffey, M.D Oudemans, P.V Man in't Veld, W.A Gruyter, H. de Cunningham, J Louws, F.J |
| description | A homothallic semipapillate slow growing Phytophthora species associated with root rot of strawberries from greenhouse-grown plants in North Carolina, USA, root rot of roses in the Netherlands, and root rot of raspberry in Knoxfield, Australia, was identified. The main character of this organism is the production of paragynous antheridia with broad attachment to the oogonial wall. The morphology of the pathogen does not match that of any of the more than 85 described Phytophthora species. Phylogenetic analysis based on sequences of the internal transcribed spacer rDNA region (ITS1-5.8S-ITS2) of this taxon and those from other Phytophthora species from GenBank supports the conclusion that this organism is an unreported new species. In the phylogenetic tree with other reported Phytophthora species at the GenBank, the new species is more closely related to others in ITS clade 2 comprising semipapillate taxa including P. botryosa, P. citrophthora, P. colocasiae, P. meadii, P. citricola, P. inflata, P.tropicalis, P. capsici, Phytophthora sp. 'glovera' and P. multivesiculata. The most closely related species is P. multivesiculata isolated from Cymbidium orchid in the Netherlands. In this paper we describe the morphological characteristics and the phylogenetic relationships that support the description of this taxon as a new species Phytophthora bisheria sp. nov. |
| doi_str_mv | 10.1080/15572536.2008.11832502 |
| format | Article |
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The main character of this organism is the production of paragynous antheridia with broad attachment to the oogonial wall. The morphology of the pathogen does not match that of any of the more than 85 described Phytophthora species. Phylogenetic analysis based on sequences of the internal transcribed spacer rDNA region (ITS1-5.8S-ITS2) of this taxon and those from other Phytophthora species from GenBank supports the conclusion that this organism is an unreported new species. In the phylogenetic tree with other reported Phytophthora species at the GenBank, the new species is more closely related to others in ITS clade 2 comprising semipapillate taxa including P. botryosa, P. citrophthora, P. colocasiae, P. meadii, P. citricola, P. inflata, P.tropicalis, P. capsici, Phytophthora sp. 'glovera' and P. multivesiculata. The most closely related species is P. multivesiculata isolated from Cymbidium orchid in the Netherlands. In this paper we describe the morphological characteristics and the phylogenetic relationships that support the description of this taxon as a new species Phytophthora bisheria sp. nov.</description><identifier>ISSN: 0027-5514</identifier><identifier>EISSN: 1557-2536</identifier><identifier>DOI: 10.1080/15572536.2008.11832502</identifier><identifier>PMID: 18488356</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Australia ; Biological taxonomies ; DNA, Fungal - genetics ; DNA, Ribosomal - genetics ; DNA, Ribosomal Spacer - genetics ; Fragaria ; Fragaria - microbiology ; fungal anatomy ; host plants ; internal transcribed spacers ; ITS ; Molecular Sequence Data ; molecular systematics ; morphology ; Netherlands ; New species ; Oogonia ; Oomycetes ; Oospores ; pathogenicity ; Phylogenetics ; Phylogeny ; Phytopathology ; Phytophthora ; Phytophthora - classification ; Phytophthora - cytology ; Phytophthora - genetics ; Phytophthora - isolation & purification ; Phytophthora bisheria ; Plant Diseases - microbiology ; plant pathogenic fungi ; Plant roots ; Plant Roots - microbiology ; Plants ; raspberries ; ribosomal DNA ; Rosa ; Rosa - microbiology ; Rosaceae - microbiology ; Rubus idaeus ; sequence analysis ; Sequence Analysis, DNA ; Sporangia ; Spores, Fungal - cytology ; Straminipiles ; strawberries ; Systematics ; taxonomy ; United States ; Veld</subject><ispartof>Mycologia, 2008, Vol.100 (1), p.99-110</ispartof><rights>2008 by The Mycological Society of America 2008</rights><rights>Copyright 2008 The Mycological Society of America</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2586-87eabe19f92af4eec9af4729db546a4cf6c16ae0b1aa999edc22ffb548dda3f53</citedby><cites>FETCH-LOGICAL-c2586-87eabe19f92af4eec9af4729db546a4cf6c16ae0b1aa999edc22ffb548dda3f53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/20444929$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20444929$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>315,781,785,804,4025,27927,27928,27929,58021,58254</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18488356$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Abad, Z.G</creatorcontrib><creatorcontrib>Coffey, M.D</creatorcontrib><creatorcontrib>Oudemans, P.V</creatorcontrib><creatorcontrib>Man in't Veld, W.A</creatorcontrib><creatorcontrib>Gruyter, H. de</creatorcontrib><creatorcontrib>Cunningham, J</creatorcontrib><creatorcontrib>Louws, F.J</creatorcontrib><title>Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents</title><title>Mycologia</title><addtitle>Mycologia</addtitle><description>A homothallic semipapillate slow growing Phytophthora species associated with root rot of strawberries from greenhouse-grown plants in North Carolina, USA, root rot of roses in the Netherlands, and root rot of raspberry in Knoxfield, Australia, was identified. The main character of this organism is the production of paragynous antheridia with broad attachment to the oogonial wall. The morphology of the pathogen does not match that of any of the more than 85 described Phytophthora species. Phylogenetic analysis based on sequences of the internal transcribed spacer rDNA region (ITS1-5.8S-ITS2) of this taxon and those from other Phytophthora species from GenBank supports the conclusion that this organism is an unreported new species. In the phylogenetic tree with other reported Phytophthora species at the GenBank, the new species is more closely related to others in ITS clade 2 comprising semipapillate taxa including P. botryosa, P. citrophthora, P. colocasiae, P. meadii, P. citricola, P. inflata, P.tropicalis, P. capsici, Phytophthora sp. 'glovera' and P. multivesiculata. The most closely related species is P. multivesiculata isolated from Cymbidium orchid in the Netherlands. In this paper we describe the morphological characteristics and the phylogenetic relationships that support the description of this taxon as a new species Phytophthora bisheria sp. nov.</description><subject>Australia</subject><subject>Biological taxonomies</subject><subject>DNA, Fungal - genetics</subject><subject>DNA, Ribosomal - genetics</subject><subject>DNA, Ribosomal Spacer - genetics</subject><subject>Fragaria</subject><subject>Fragaria - microbiology</subject><subject>fungal anatomy</subject><subject>host plants</subject><subject>internal transcribed spacers</subject><subject>ITS</subject><subject>Molecular Sequence Data</subject><subject>molecular systematics</subject><subject>morphology</subject><subject>Netherlands</subject><subject>New species</subject><subject>Oogonia</subject><subject>Oomycetes</subject><subject>Oospores</subject><subject>pathogenicity</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Phytopathology</subject><subject>Phytophthora</subject><subject>Phytophthora - classification</subject><subject>Phytophthora - cytology</subject><subject>Phytophthora - genetics</subject><subject>Phytophthora - isolation & purification</subject><subject>Phytophthora bisheria</subject><subject>Plant Diseases - microbiology</subject><subject>plant pathogenic fungi</subject><subject>Plant roots</subject><subject>Plant Roots - microbiology</subject><subject>Plants</subject><subject>raspberries</subject><subject>ribosomal DNA</subject><subject>Rosa</subject><subject>Rosa - microbiology</subject><subject>Rosaceae - microbiology</subject><subject>Rubus idaeus</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Sporangia</subject><subject>Spores, Fungal - cytology</subject><subject>Straminipiles</subject><subject>strawberries</subject><subject>Systematics</subject><subject>taxonomy</subject><subject>United States</subject><subject>Veld</subject><issn>0027-5514</issn><issn>1557-2536</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFUctu1TAQjRCIXgqfQPGKVRP8iPNYVhUUpEogoGtr4oyJqyQOti9X9xf46jrkFpasRjPnMWOfLLtgtGC0oe-YlDWXoio4pU3BWCO4pPxJtluBfEWeZjtKeZ1Lycqz7EUI96lNKH2enbGmbBohq132-8twjG4Z4uA8kM6GAb0FEpaCzO5XcUmAzHhIPWqLgdge52iNxZ7YmdjgRohpbLybSByQfHUBNLp9IB7C0qH3x0viXUACc09C9HD4M1zVcfCIRLtkOCfX8DJ7ZmAM-OpUz7O7D--_X3_Mbz_ffLq-us01l02VNzVCh6w1LQdTIuo2lZq3fSfLCkptKs0qQNoxgLZtsdecG5PApu9BGCnOs7eb7-Ldzz2GqCYbNI4jzOvlqqZ1VUkmErHaiDq9IHg0avF2An9UjKo1BfWYglpTUI8pJOHFacO-m7D_Jzt9eyK83gj3ITr_F-e0LMuWtwm_2nA7G-cnODg_9irCcXTeeJi1DUr894g3m4cBp-CHT5K7b5wykVgtFZKKByOXrUc</recordid><startdate>2008</startdate><enddate>2008</enddate><creator>Abad, Z.G</creator><creator>Coffey, M.D</creator><creator>Oudemans, P.V</creator><creator>Man in't Veld, W.A</creator><creator>Gruyter, H. de</creator><creator>Cunningham, J</creator><creator>Louws, F.J</creator><general>Taylor & Francis</general><general>Mycologia Society of America</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>2008</creationdate><title>Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents</title><author>Abad, Z.G ; Coffey, M.D ; Oudemans, P.V ; Man in't Veld, W.A ; Gruyter, H. de ; Cunningham, J ; Louws, F.J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2586-87eabe19f92af4eec9af4729db546a4cf6c16ae0b1aa999edc22ffb548dda3f53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Australia</topic><topic>Biological taxonomies</topic><topic>DNA, Fungal - genetics</topic><topic>DNA, Ribosomal - genetics</topic><topic>DNA, Ribosomal Spacer - genetics</topic><topic>Fragaria</topic><topic>Fragaria - microbiology</topic><topic>fungal anatomy</topic><topic>host plants</topic><topic>internal transcribed spacers</topic><topic>ITS</topic><topic>Molecular Sequence Data</topic><topic>molecular systematics</topic><topic>morphology</topic><topic>Netherlands</topic><topic>New species</topic><topic>Oogonia</topic><topic>Oomycetes</topic><topic>Oospores</topic><topic>pathogenicity</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Phytopathology</topic><topic>Phytophthora</topic><topic>Phytophthora - classification</topic><topic>Phytophthora - cytology</topic><topic>Phytophthora - genetics</topic><topic>Phytophthora - isolation & purification</topic><topic>Phytophthora bisheria</topic><topic>Plant Diseases - microbiology</topic><topic>plant pathogenic fungi</topic><topic>Plant roots</topic><topic>Plant Roots - microbiology</topic><topic>Plants</topic><topic>raspberries</topic><topic>ribosomal DNA</topic><topic>Rosa</topic><topic>Rosa - microbiology</topic><topic>Rosaceae - microbiology</topic><topic>Rubus idaeus</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Sporangia</topic><topic>Spores, Fungal - cytology</topic><topic>Straminipiles</topic><topic>strawberries</topic><topic>Systematics</topic><topic>taxonomy</topic><topic>United States</topic><topic>Veld</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Abad, Z.G</creatorcontrib><creatorcontrib>Coffey, M.D</creatorcontrib><creatorcontrib>Oudemans, P.V</creatorcontrib><creatorcontrib>Man in't Veld, W.A</creatorcontrib><creatorcontrib>Gruyter, H. de</creatorcontrib><creatorcontrib>Cunningham, J</creatorcontrib><creatorcontrib>Louws, F.J</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Mycologia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abad, Z.G</au><au>Coffey, M.D</au><au>Oudemans, P.V</au><au>Man in't Veld, W.A</au><au>Gruyter, H. de</au><au>Cunningham, J</au><au>Louws, F.J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents</atitle><jtitle>Mycologia</jtitle><addtitle>Mycologia</addtitle><date>2008</date><risdate>2008</risdate><volume>100</volume><issue>1</issue><spage>99</spage><epage>110</epage><pages>99-110</pages><issn>0027-5514</issn><eissn>1557-2536</eissn><abstract>A homothallic semipapillate slow growing Phytophthora species associated with root rot of strawberries from greenhouse-grown plants in North Carolina, USA, root rot of roses in the Netherlands, and root rot of raspberry in Knoxfield, Australia, was identified. The main character of this organism is the production of paragynous antheridia with broad attachment to the oogonial wall. The morphology of the pathogen does not match that of any of the more than 85 described Phytophthora species. Phylogenetic analysis based on sequences of the internal transcribed spacer rDNA region (ITS1-5.8S-ITS2) of this taxon and those from other Phytophthora species from GenBank supports the conclusion that this organism is an unreported new species. In the phylogenetic tree with other reported Phytophthora species at the GenBank, the new species is more closely related to others in ITS clade 2 comprising semipapillate taxa including P. botryosa, P. citrophthora, P. colocasiae, P. meadii, P. citricola, P. inflata, P.tropicalis, P. capsici, Phytophthora sp. 'glovera' and P. multivesiculata. The most closely related species is P. multivesiculata isolated from Cymbidium orchid in the Netherlands. In this paper we describe the morphological characteristics and the phylogenetic relationships that support the description of this taxon as a new species Phytophthora bisheria sp. nov.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>18488356</pmid><doi>10.1080/15572536.2008.11832502</doi><tpages>12</tpages></addata></record> |
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| ispartof | Mycologia, 2008, Vol.100 (1), p.99-110 |
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| subjects | Australia Biological taxonomies DNA, Fungal - genetics DNA, Ribosomal - genetics DNA, Ribosomal Spacer - genetics Fragaria Fragaria - microbiology fungal anatomy host plants internal transcribed spacers ITS Molecular Sequence Data molecular systematics morphology Netherlands New species Oogonia Oomycetes Oospores pathogenicity Phylogenetics Phylogeny Phytopathology Phytophthora Phytophthora - classification Phytophthora - cytology Phytophthora - genetics Phytophthora - isolation & purification Phytophthora bisheria Plant Diseases - microbiology plant pathogenic fungi Plant roots Plant Roots - microbiology Plants raspberries ribosomal DNA Rosa Rosa - microbiology Rosaceae - microbiology Rubus idaeus sequence analysis Sequence Analysis, DNA Sporangia Spores, Fungal - cytology Straminipiles strawberries Systematics taxonomy United States Veld |
| title | Phytophthora bisheria sp. nov., a new species identified in isolates from the Rosaceous raspberry, rose and strawberry in three continents |
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