overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences
In this study we provide a phylogenetically based introduction to the classes and orders of Pucciniomycotina (= Urediniomycetes), one of three subphyla of Basidiomycota. More than 8000 species of Pucciniomycotina have been described including putative saprotrophs and parasites of plants, animals and...
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| Veröffentlicht in: | Mycologia 2006-11, Vol.98 (6), p.896-905 |
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| creator | Aime, M.C Matheny, P.B Henk, D.A Frieders, E.M Nilsson, R.H Piepenbring, M McLaughlin, D.J Szabo,L.J Begerow, D Sampaio, J.P |
| description | In this study we provide a phylogenetically based introduction to the classes and orders of Pucciniomycotina (= Urediniomycetes), one of three subphyla of Basidiomycota. More than 8000 species of Pucciniomycotina have been described including putative saprotrophs and parasites of plants, animals and fungi. The overwhelming majority of these (~90%) belong to a single order of obligate plant pathogens, the Pucciniales (= Uredinales), or rust fungi. We have assembled a dataset of previously published and newly generated sequence data from two nuclear rDNA genes (large subunit and small subunit) including exemplars from all known major groups in order to test hypotheses about evolutionary relationships among the Pucciniomycotina. The utility of combining nuc-lsu sequences spanning the entire D1-D3 region with complete nuc-ssu sequences for resolution and support of nodes is discussed. Our study confirms Pucciniomycotina as a monophyletic group of Basidiomycota. In total our results support eight major clades ranked as classes (Agaricostilbomycetes, Atractiellomycetes, Classiculomycetes, Cryptomycocolacomycetes, Cystobasidiomycetes, Microbotryomycetes, Mixiomycetes and Pucciniomycetes) and 18 orders. |
| doi_str_mv | 10.1080/15572536.2006.11832619 |
| format | Article |
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More than 8000 species of Pucciniomycotina have been described including putative saprotrophs and parasites of plants, animals and fungi. The overwhelming majority of these (~90%) belong to a single order of obligate plant pathogens, the Pucciniales (= Uredinales), or rust fungi. We have assembled a dataset of previously published and newly generated sequence data from two nuclear rDNA genes (large subunit and small subunit) including exemplars from all known major groups in order to test hypotheses about evolutionary relationships among the Pucciniomycotina. The utility of combining nuc-lsu sequences spanning the entire D1-D3 region with complete nuc-ssu sequences for resolution and support of nodes is discussed. Our study confirms Pucciniomycotina as a monophyletic group of Basidiomycota. In total our results support eight major clades ranked as classes (Agaricostilbomycetes, Atractiellomycetes, Classiculomycetes, Cryptomycocolacomycetes, Cystobasidiomycetes, Microbotryomycetes, Mixiomycetes and Pucciniomycetes) and 18 orders.</description><identifier>ISSN: 0027-5514</identifier><identifier>EISSN: 1557-2536</identifier><identifier>DOI: 10.1080/15572536.2006.11832619</identifier><identifier>PMID: 17486966</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>basidiomycetes ; BASIDIOMYCETOUS YEASTS ; Basidiomycota ; Basidiomycota - classification ; Basidiomycota - cytology ; Basidiomycota - genetics ; Basidiomycota - growth & development ; Biologi ; Biological Sciences ; Biological taxonomies ; Datasets ; DNA, Fungal - chemistry ; DNA, Fungal - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; EOCRONARTIUM-MUSCICOLA ; Evolution ; Fungi ; Genera ; HETEROBASIDIOMYCETE ; LIFE ; molecular phylogenetics ; Molecular Sequence Data ; molecular systematics ; PACHNOCYBE-FERRUGINEA ; parasitic fungi ; Phylogeny ; plant pathogenic fungi ; rDNA ; rDNA systematics ; Ribosomal DNA ; RIBOSOMAL DNA-SEQUENCES ; RNA GENE ; RNA, Ribosomal, 18S - genetics ; RNA, Ribosomal, 28S - genetics ; RUST FUNGI ; sequence analysis ; Sequence Analysis, DNA ; SMUT FUNGI ; systematics ; Taxa ; TUBERCULINA ; Uredinales ; Urediniomycetes ; Yeasts</subject><ispartof>Mycologia, 2006-11, Vol.98 (6), p.896-905</ispartof><rights>2006 by The Mycological Society of America 2006</rights><rights>Copyright 2006 The Mycological Society of America</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3749-29adf49bb73a2c602ca6e1d58e4271c92f98d0ea2dd11033adfd56a2d2026d833</citedby><cites>FETCH-LOGICAL-c3749-29adf49bb73a2c602ca6e1d58e4271c92f98d0ea2dd11033adfd56a2d2026d833</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/20444779$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/20444779$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17486966$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://gup.ub.gu.se/publication/59001$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Aime, M.C</creatorcontrib><creatorcontrib>Matheny, P.B</creatorcontrib><creatorcontrib>Henk, D.A</creatorcontrib><creatorcontrib>Frieders, E.M</creatorcontrib><creatorcontrib>Nilsson, R.H</creatorcontrib><creatorcontrib>Piepenbring, M</creatorcontrib><creatorcontrib>McLaughlin, D.J</creatorcontrib><creatorcontrib>Szabo,L.J</creatorcontrib><creatorcontrib>Begerow, D</creatorcontrib><creatorcontrib>Sampaio, J.P</creatorcontrib><title>overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences</title><title>Mycologia</title><addtitle>Mycologia</addtitle><description>In this study we provide a phylogenetically based introduction to the classes and orders of Pucciniomycotina (= Urediniomycetes), one of three subphyla of Basidiomycota. More than 8000 species of Pucciniomycotina have been described including putative saprotrophs and parasites of plants, animals and fungi. The overwhelming majority of these (~90%) belong to a single order of obligate plant pathogens, the Pucciniales (= Uredinales), or rust fungi. We have assembled a dataset of previously published and newly generated sequence data from two nuclear rDNA genes (large subunit and small subunit) including exemplars from all known major groups in order to test hypotheses about evolutionary relationships among the Pucciniomycotina. The utility of combining nuc-lsu sequences spanning the entire D1-D3 region with complete nuc-ssu sequences for resolution and support of nodes is discussed. Our study confirms Pucciniomycotina as a monophyletic group of Basidiomycota. In total our results support eight major clades ranked as classes (Agaricostilbomycetes, Atractiellomycetes, Classiculomycetes, Cryptomycocolacomycetes, Cystobasidiomycetes, Microbotryomycetes, Mixiomycetes and Pucciniomycetes) and 18 orders.</description><subject>basidiomycetes</subject><subject>BASIDIOMYCETOUS YEASTS</subject><subject>Basidiomycota</subject><subject>Basidiomycota - classification</subject><subject>Basidiomycota - cytology</subject><subject>Basidiomycota - genetics</subject><subject>Basidiomycota - growth & development</subject><subject>Biologi</subject><subject>Biological Sciences</subject><subject>Biological taxonomies</subject><subject>Datasets</subject><subject>DNA, Fungal - chemistry</subject><subject>DNA, Fungal - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>EOCRONARTIUM-MUSCICOLA</subject><subject>Evolution</subject><subject>Fungi</subject><subject>Genera</subject><subject>HETEROBASIDIOMYCETE</subject><subject>LIFE</subject><subject>molecular phylogenetics</subject><subject>Molecular Sequence Data</subject><subject>molecular systematics</subject><subject>PACHNOCYBE-FERRUGINEA</subject><subject>parasitic fungi</subject><subject>Phylogeny</subject><subject>plant pathogenic fungi</subject><subject>rDNA</subject><subject>rDNA systematics</subject><subject>Ribosomal DNA</subject><subject>RIBOSOMAL DNA-SEQUENCES</subject><subject>RNA GENE</subject><subject>RNA, Ribosomal, 18S - genetics</subject><subject>RNA, Ribosomal, 28S - genetics</subject><subject>RUST FUNGI</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>SMUT FUNGI</subject><subject>systematics</subject><subject>Taxa</subject><subject>TUBERCULINA</subject><subject>Uredinales</subject><subject>Urediniomycetes</subject><subject>Yeasts</subject><issn>0027-5514</issn><issn>1557-2536</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1u1DAUhSMEokPhEShesSKDfxI7WY5a_qQKkKBry7FvZlw59mAnM5p34KFxlGlZdmVfn-8eX91TFFcErwlu8EdS14LWjK8pxnxNSMMoJ-2zYjUL5aw8L1YYU1HWNakuilcp3ecyq_hlcUFE1fCW81XxNxwgHiwcUejRuAO0s9sdROTgAA5pp1KyvdVqtMHPyM9Ja-ttGE46jNYr1KkEBmVRh6GzPt-VV-6UIM24n7QDle1U3EJWDEqDcg6lqZu8HVG8-b5BCf5M4DWk18WLXrkEb87nZXH3-dPv66_l7Y8v3643t6VmompL2irTV23XCaao5phqxYGYuoGKCqJb2reNwaCoMYRgxjJtap5Liik3DWOXxYfFNx1hP3VyH-2g4kkGZeV22sv8tJ1kAlm3GJOMv1_wfQx50jTKwSYNzikPYUqSNyzvuKqeBCnmTBDOM8gXUMeQUoT-cQSC5ZyvfMhXzvnKh3xz49X5h6kbwPxvOweagbcLcJ_GEB91ivN8QswGm0W3vg9xUMcQnZGjOrkQ-6i8tkmyJ4d4t3j0Kki1jbnl7hfNi8JYiIrWnP0DOaXKfA</recordid><startdate>200611</startdate><enddate>200611</enddate><creator>Aime, M.C</creator><creator>Matheny, P.B</creator><creator>Henk, D.A</creator><creator>Frieders, E.M</creator><creator>Nilsson, R.H</creator><creator>Piepenbring, M</creator><creator>McLaughlin, D.J</creator><creator>Szabo,L.J</creator><creator>Begerow, D</creator><creator>Sampaio, J.P</creator><general>Taylor & Francis</general><general>Mycologia Society of America</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>M7N</scope><scope>7X8</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>F1U</scope></search><sort><creationdate>200611</creationdate><title>overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences</title><author>Aime, M.C ; Matheny, P.B ; Henk, D.A ; Frieders, E.M ; Nilsson, R.H ; Piepenbring, M ; McLaughlin, D.J ; Szabo,L.J ; Begerow, D ; Sampaio, J.P</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3749-29adf49bb73a2c602ca6e1d58e4271c92f98d0ea2dd11033adfd56a2d2026d833</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>basidiomycetes</topic><topic>BASIDIOMYCETOUS YEASTS</topic><topic>Basidiomycota</topic><topic>Basidiomycota - classification</topic><topic>Basidiomycota - cytology</topic><topic>Basidiomycota - genetics</topic><topic>Basidiomycota - growth & development</topic><topic>Biologi</topic><topic>Biological Sciences</topic><topic>Biological taxonomies</topic><topic>Datasets</topic><topic>DNA, Fungal - chemistry</topic><topic>DNA, Fungal - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>EOCRONARTIUM-MUSCICOLA</topic><topic>Evolution</topic><topic>Fungi</topic><topic>Genera</topic><topic>HETEROBASIDIOMYCETE</topic><topic>LIFE</topic><topic>molecular phylogenetics</topic><topic>Molecular Sequence Data</topic><topic>molecular systematics</topic><topic>PACHNOCYBE-FERRUGINEA</topic><topic>parasitic fungi</topic><topic>Phylogeny</topic><topic>plant pathogenic fungi</topic><topic>rDNA</topic><topic>rDNA systematics</topic><topic>Ribosomal DNA</topic><topic>RIBOSOMAL DNA-SEQUENCES</topic><topic>RNA GENE</topic><topic>RNA, Ribosomal, 18S - genetics</topic><topic>RNA, Ribosomal, 28S - genetics</topic><topic>RUST FUNGI</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>SMUT FUNGI</topic><topic>systematics</topic><topic>Taxa</topic><topic>TUBERCULINA</topic><topic>Uredinales</topic><topic>Urediniomycetes</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Aime, M.C</creatorcontrib><creatorcontrib>Matheny, P.B</creatorcontrib><creatorcontrib>Henk, D.A</creatorcontrib><creatorcontrib>Frieders, E.M</creatorcontrib><creatorcontrib>Nilsson, R.H</creatorcontrib><creatorcontrib>Piepenbring, M</creatorcontrib><creatorcontrib>McLaughlin, D.J</creatorcontrib><creatorcontrib>Szabo,L.J</creatorcontrib><creatorcontrib>Begerow, D</creatorcontrib><creatorcontrib>Sampaio, J.P</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Göteborgs universitet</collection><jtitle>Mycologia</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Aime, M.C</au><au>Matheny, P.B</au><au>Henk, D.A</au><au>Frieders, E.M</au><au>Nilsson, R.H</au><au>Piepenbring, M</au><au>McLaughlin, D.J</au><au>Szabo,L.J</au><au>Begerow, D</au><au>Sampaio, J.P</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences</atitle><jtitle>Mycologia</jtitle><addtitle>Mycologia</addtitle><date>2006-11</date><risdate>2006</risdate><volume>98</volume><issue>6</issue><spage>896</spage><epage>905</epage><pages>896-905</pages><issn>0027-5514</issn><eissn>1557-2536</eissn><abstract>In this study we provide a phylogenetically based introduction to the classes and orders of Pucciniomycotina (= Urediniomycetes), one of three subphyla of Basidiomycota. 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In total our results support eight major clades ranked as classes (Agaricostilbomycetes, Atractiellomycetes, Classiculomycetes, Cryptomycocolacomycetes, Cystobasidiomycetes, Microbotryomycetes, Mixiomycetes and Pucciniomycetes) and 18 orders.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>17486966</pmid><doi>10.1080/15572536.2006.11832619</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Mycologia, 2006-11, Vol.98 (6), p.896-905 |
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| subjects | basidiomycetes BASIDIOMYCETOUS YEASTS Basidiomycota Basidiomycota - classification Basidiomycota - cytology Basidiomycota - genetics Basidiomycota - growth & development Biologi Biological Sciences Biological taxonomies Datasets DNA, Fungal - chemistry DNA, Fungal - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics EOCRONARTIUM-MUSCICOLA Evolution Fungi Genera HETEROBASIDIOMYCETE LIFE molecular phylogenetics Molecular Sequence Data molecular systematics PACHNOCYBE-FERRUGINEA parasitic fungi Phylogeny plant pathogenic fungi rDNA rDNA systematics Ribosomal DNA RIBOSOMAL DNA-SEQUENCES RNA GENE RNA, Ribosomal, 18S - genetics RNA, Ribosomal, 28S - genetics RUST FUNGI sequence analysis Sequence Analysis, DNA SMUT FUNGI systematics Taxa TUBERCULINA Uredinales Urediniomycetes Yeasts |
| title | overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences |
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