genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment
The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient...
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| Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2008-04, Vol.105 (15), p.5803-5808 |
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| creator | Alcaraz, Luis David Olmedo, Gabriela Bonilla, Germán Cerritos, René Hernández, Gustavo Cruz, Alfredo Ramírez, Enrique Putonti, Catherine Jiménez, Beatriz Martínez, Eva López, Varinia Arvizu, Jacqueline L Ayala, Francisco Razo, Francisco Caballero, Juan Siefert, Janet Eguiarte, Luis Vielle, Jean-Philippe Martínez, Octavio Souza, Valeria Herrera-Estrella, Alfredo Herrera-Estrella, Luis |
| description | The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels ( |
| doi_str_mv | 10.1073/pnas.0800981105 |
| format | Article |
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A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 μM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.0800981105</identifier><identifier>PMID: 18408155</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Adaptation, Physiological - genetics ; Bacillus ; Bacillus - genetics ; Bacteria ; Base Sequence ; Basins ; Biological adaptation ; Biological Evolution ; Biological Sciences ; Cyanobacteria ; Environment ; Evolution ; Gene Transfer, Horizontal ; Genes, Bacterial ; Genetic diversity ; Genome, Bacterial ; Genomes ; Genomics ; Light ; Lipids ; Microbiology ; Microorganisms ; Molecular Sequence Data ; Phosphorus - metabolism ; Ponds ; Reverse transcriptase polymerase chain reaction ; Seawater ; Sequencing</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (15), p.5803-5808</ispartof><rights>Copyright 2008 The National Academy of Sciences of the United States of America</rights><rights>Copyright National Academy of Sciences Apr 15, 2008</rights><rights>2008 by The National Academy of Sciences of the USA</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c552t-68b3040e7836d9ee59fa991e5298edae3aeb1b1f33efe75662315e00e78247e63</citedby><cites>FETCH-LOGICAL-c552t-68b3040e7836d9ee59fa991e5298edae3aeb1b1f33efe75662315e00e78247e63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/105/15.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/25461690$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/25461690$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,723,776,780,799,881,27901,27902,53766,53768,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18408155$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Alcaraz, Luis David</creatorcontrib><creatorcontrib>Olmedo, Gabriela</creatorcontrib><creatorcontrib>Bonilla, Germán</creatorcontrib><creatorcontrib>Cerritos, René</creatorcontrib><creatorcontrib>Hernández, Gustavo</creatorcontrib><creatorcontrib>Cruz, Alfredo</creatorcontrib><creatorcontrib>Ramírez, Enrique</creatorcontrib><creatorcontrib>Putonti, Catherine</creatorcontrib><creatorcontrib>Jiménez, Beatriz</creatorcontrib><creatorcontrib>Martínez, Eva</creatorcontrib><creatorcontrib>López, Varinia</creatorcontrib><creatorcontrib>Arvizu, Jacqueline L</creatorcontrib><creatorcontrib>Ayala, Francisco</creatorcontrib><creatorcontrib>Razo, Francisco</creatorcontrib><creatorcontrib>Caballero, Juan</creatorcontrib><creatorcontrib>Siefert, Janet</creatorcontrib><creatorcontrib>Eguiarte, Luis</creatorcontrib><creatorcontrib>Vielle, Jean-Philippe</creatorcontrib><creatorcontrib>Martínez, Octavio</creatorcontrib><creatorcontrib>Souza, Valeria</creatorcontrib><creatorcontrib>Herrera-Estrella, Alfredo</creatorcontrib><creatorcontrib>Herrera-Estrella, Luis</creatorcontrib><title>genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 μM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian.</description><subject>Adaptation, Physiological - genetics</subject><subject>Bacillus</subject><subject>Bacillus - genetics</subject><subject>Bacteria</subject><subject>Base Sequence</subject><subject>Basins</subject><subject>Biological adaptation</subject><subject>Biological Evolution</subject><subject>Biological Sciences</subject><subject>Cyanobacteria</subject><subject>Environment</subject><subject>Evolution</subject><subject>Gene Transfer, Horizontal</subject><subject>Genes, Bacterial</subject><subject>Genetic diversity</subject><subject>Genome, Bacterial</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Light</subject><subject>Lipids</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Molecular Sequence Data</subject><subject>Phosphorus - 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PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2008-04-15</date><risdate>2008</risdate><volume>105</volume><issue>15</issue><spage>5803</spage><epage>5808</epage><pages>5803-5808</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 μM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>18408155</pmid><doi>10.1073/pnas.0800981105</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 0027-8424 |
| ispartof | Proceedings of the National Academy of Sciences - PNAS, 2008-04, Vol.105 (15), p.5803-5808 |
| issn | 0027-8424 1091-6490 |
| language | eng |
| recordid | cdi_crossref_primary_10_1073_pnas_0800981105 |
| source | Jstor Complete Legacy; MEDLINE; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry |
| subjects | Adaptation, Physiological - genetics Bacillus Bacillus - genetics Bacteria Base Sequence Basins Biological adaptation Biological Evolution Biological Sciences Cyanobacteria Environment Evolution Gene Transfer, Horizontal Genes, Bacterial Genetic diversity Genome, Bacterial Genomes Genomics Light Lipids Microbiology Microorganisms Molecular Sequence Data Phosphorus - metabolism Ponds Reverse transcriptase polymerase chain reaction Seawater Sequencing |
| title | genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment |
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