Femtosecond Resolution of Ligand-Heme Interactions in the High-Affinity Quinol Oxidase bd: A Di-Heme Active Site?
Interaction of the two high-spin hemes in the oxygen reduction site of the bd-type quinol oxidase from Escherichia coli has been studied by femtosecond multicolor transient absorption spectroscopy. The previously unidentified Soret band of ferrous heme b595was determined to be centered around 440 nm...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2000-02, Vol.97 (4), p.1554-1559 |
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description | Interaction of the two high-spin hemes in the oxygen reduction site of the bd-type quinol oxidase from Escherichia coli has been studied by femtosecond multicolor transient absorption spectroscopy. The previously unidentified Soret band of ferrous heme b595was determined to be centered around 440 nm by selective excitation of the fully reduced unliganded or CO-bound cytochrome bd in the α -band of heme b595. The redox state of the b-type hemes strongly affects both the line shape and the kinetics of the absorption changes induced by photodissociation of CO from heme d. In the reduced enzyme, CO photodissociation from heme d perturbs the spectrum of ferrous cytochrome b595within a few ps, pointing to a direct interaction between hemes b595and d. Whereas in the reduced enzyme no heme d-CO geminate recombination is observed, in the mixed-valence CO-liganded complex with heme b595initially oxidized, a significant part of photodissociated CO does not leave the protein and recombines with heme d within a few hundred ps. This caging effect may indicate that ferrous heme b595provides a transient binding site for carbon monoxide within one of the routes by which the dissociated ligand leaves the protein. Taken together, the data indicate physical proximity of the hemes d and b595and corroborate the possibility of a functional cooperation between the two hemes in the dioxygen-reducing center of cytochrome bd. |
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The previously unidentified Soret band of ferrous heme b595was determined to be centered around 440 nm by selective excitation of the fully reduced unliganded or CO-bound cytochrome bd in the α -band of heme b595. The redox state of the b-type hemes strongly affects both the line shape and the kinetics of the absorption changes induced by photodissociation of CO from heme d. In the reduced enzyme, CO photodissociation from heme d perturbs the spectrum of ferrous cytochrome b595within a few ps, pointing to a direct interaction between hemes b595and d. Whereas in the reduced enzyme no heme d-CO geminate recombination is observed, in the mixed-valence CO-liganded complex with heme b595initially oxidized, a significant part of photodissociated CO does not leave the protein and recombines with heme d within a few hundred ps. This caging effect may indicate that ferrous heme b595provides a transient binding site for carbon monoxide within one of the routes by which the dissociated ligand leaves the protein. Taken together, the data indicate physical proximity of the hemes d and b595and corroborate the possibility of a functional cooperation between the two hemes in the dioxygen-reducing center of cytochrome bd.</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.030528197</identifier><identifier>PMID: 10660685</identifier><language>eng</language><publisher>United States: National Academy of Sciences of the United States of America</publisher><subject>Absorption spectra ; Bacteria ; Binding Sites ; Biochemistry ; Biological Sciences ; Carbon Monoxide - chemistry ; Cytochrome a Group - chemistry ; Cytochrome b Group ; cytochrome bd ; Cytochromes ; Cytochromes - chemistry ; Cytochromes a1 ; Electron Transport Chain Complex Proteins ; Enzymes ; Escherichia coli ; Escherichia coli - enzymology ; Escherichia coli Proteins ; Heme - analogs & derivatives ; Heme - chemistry ; Heme - metabolism ; Iron ; Kinetics ; Ligands ; Line spectra ; Oxidases ; Oxidation-Reduction ; Oxidoreductases - chemistry ; Oxygen ; Photolysis ; Physics ; Proteins ; quinol oxidase ; Spectral bands ; Spectrophotometry ; Spectrum analysis</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2000-02, Vol.97 (4), p.1554-1559</ispartof><rights>Copyright 1993-2000 National Academy of Sciences of the United States of America</rights><rights>Copyright National Academy of Sciences Feb 15, 2000</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><rights>Copyright © 2000, The National Academy of Sciences 2000</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c549t-77ecf6ca32ac4610f3c4e9e0361d300e39c95ccd95ba2e4d473e11fe2fe5be783</citedby><cites>FETCH-LOGICAL-c549t-77ecf6ca32ac4610f3c4e9e0361d300e39c95ccd95ba2e4d473e11fe2fe5be783</cites><orcidid>0000-0003-0869-4388 ; 0000-0003-0493-4831</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/97/4.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/121513$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/121513$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,723,776,780,799,881,27901,27902,53766,53768,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10660685$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://polytechnique.hal.science/hal-00837031$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Vos, Marten H.</creatorcontrib><creatorcontrib>Borisov, Vitaliy B.</creatorcontrib><creatorcontrib>Liebl, Ursula</creatorcontrib><creatorcontrib>Martin, Jean-Louis</creatorcontrib><creatorcontrib>Konstantinov, Alexander A.</creatorcontrib><title>Femtosecond Resolution of Ligand-Heme Interactions in the High-Affinity Quinol Oxidase bd: A Di-Heme Active Site?</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Interaction of the two high-spin hemes in the oxygen reduction site of the bd-type quinol oxidase from Escherichia coli has been studied by femtosecond multicolor transient absorption spectroscopy. The previously unidentified Soret band of ferrous heme b595was determined to be centered around 440 nm by selective excitation of the fully reduced unliganded or CO-bound cytochrome bd in the α -band of heme b595. The redox state of the b-type hemes strongly affects both the line shape and the kinetics of the absorption changes induced by photodissociation of CO from heme d. In the reduced enzyme, CO photodissociation from heme d perturbs the spectrum of ferrous cytochrome b595within a few ps, pointing to a direct interaction between hemes b595and d. Whereas in the reduced enzyme no heme d-CO geminate recombination is observed, in the mixed-valence CO-liganded complex with heme b595initially oxidized, a significant part of photodissociated CO does not leave the protein and recombines with heme d within a few hundred ps. This caging effect may indicate that ferrous heme b595provides a transient binding site for carbon monoxide within one of the routes by which the dissociated ligand leaves the protein. Taken together, the data indicate physical proximity of the hemes d and b595and corroborate the possibility of a functional cooperation between the two hemes in the dioxygen-reducing center of cytochrome bd.</description><subject>Absorption spectra</subject><subject>Bacteria</subject><subject>Binding Sites</subject><subject>Biochemistry</subject><subject>Biological Sciences</subject><subject>Carbon Monoxide - chemistry</subject><subject>Cytochrome a Group - chemistry</subject><subject>Cytochrome b Group</subject><subject>cytochrome bd</subject><subject>Cytochromes</subject><subject>Cytochromes - chemistry</subject><subject>Cytochromes a1</subject><subject>Electron Transport Chain Complex Proteins</subject><subject>Enzymes</subject><subject>Escherichia coli</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli Proteins</subject><subject>Heme - analogs & derivatives</subject><subject>Heme - chemistry</subject><subject>Heme - metabolism</subject><subject>Iron</subject><subject>Kinetics</subject><subject>Ligands</subject><subject>Line spectra</subject><subject>Oxidases</subject><subject>Oxidation-Reduction</subject><subject>Oxidoreductases - chemistry</subject><subject>Oxygen</subject><subject>Photolysis</subject><subject>Physics</subject><subject>Proteins</subject><subject>quinol oxidase</subject><subject>Spectral bands</subject><subject>Spectrophotometry</subject><subject>Spectrum analysis</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkd1r2zAUxc3YWNNur3sZG6IPgz04u7JkyyqDEbp1KQTKvp6FIl8nCo6UWnJo__vZOOuysieBzu_cc6WTJK8oTCkI9mHndJgCgzwrqRRPkgkFSdOCS3iaTAAykZY84yfJaQgbAJB5Cc-TEwpFAUWZT5LbK9xGH9B4V5HvGHzTResd8TVZ2JV2VTrHLZJrF7HVZpACsY7ENZK5Xa3TWV1bZ-M9-dZZ5xtyc2crHZAsqwsyI5_taJ_1zj2SHzbipxfJs1o3AV8ezrPk19WXn5fzdHHz9fpytkhNzmVMhUBTF0azTBteUKiZ4SgRWEErBoBMGpkbU8l8qTPkFRcMKa0xqzFfoijZWfJxnLvrllusDLrY6kbtWrvV7b3y2qp_FWfXauX3Kiv6Wb39_WhfPzLNZws13AGUTACje9qz7w5Rrb_tMES1tcFg02iHvguKCi5oIXkPnj8CN75rXf8NKgPKSlqwYfHpCJnWh9Bi_RBPQQ2lq6F09VB6b3h7_NIjfGy5B94cgMH4R5ZCcUXznB_t_19d1V3TRLyLPfh6BDch-vZvUEZzythvQ13IzQ</recordid><startdate>20000215</startdate><enddate>20000215</enddate><creator>Vos, Marten H.</creator><creator>Borisov, Vitaliy B.</creator><creator>Liebl, Ursula</creator><creator>Martin, Jean-Louis</creator><creator>Konstantinov, Alexander A.</creator><general>National Academy of Sciences of the United States of America</general><general>National Acad Sciences</general><general>National Academy of Sciences</general><general>The National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>1XC</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-0869-4388</orcidid><orcidid>https://orcid.org/0000-0003-0493-4831</orcidid></search><sort><creationdate>20000215</creationdate><title>Femtosecond Resolution of Ligand-Heme Interactions in the High-Affinity Quinol Oxidase bd: A Di-Heme Active Site?</title><author>Vos, Marten H. ; 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The previously unidentified Soret band of ferrous heme b595was determined to be centered around 440 nm by selective excitation of the fully reduced unliganded or CO-bound cytochrome bd in the α -band of heme b595. The redox state of the b-type hemes strongly affects both the line shape and the kinetics of the absorption changes induced by photodissociation of CO from heme d. In the reduced enzyme, CO photodissociation from heme d perturbs the spectrum of ferrous cytochrome b595within a few ps, pointing to a direct interaction between hemes b595and d. Whereas in the reduced enzyme no heme d-CO geminate recombination is observed, in the mixed-valence CO-liganded complex with heme b595initially oxidized, a significant part of photodissociated CO does not leave the protein and recombines with heme d within a few hundred ps. This caging effect may indicate that ferrous heme b595provides a transient binding site for carbon monoxide within one of the routes by which the dissociated ligand leaves the protein. Taken together, the data indicate physical proximity of the hemes d and b595and corroborate the possibility of a functional cooperation between the two hemes in the dioxygen-reducing center of cytochrome bd.</abstract><cop>United States</cop><pub>National Academy of Sciences of the United States of America</pub><pmid>10660685</pmid><doi>10.1073/pnas.030528197</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0003-0869-4388</orcidid><orcidid>https://orcid.org/0000-0003-0493-4831</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Absorption spectra Bacteria Binding Sites Biochemistry Biological Sciences Carbon Monoxide - chemistry Cytochrome a Group - chemistry Cytochrome b Group cytochrome bd Cytochromes Cytochromes - chemistry Cytochromes a1 Electron Transport Chain Complex Proteins Enzymes Escherichia coli Escherichia coli - enzymology Escherichia coli Proteins Heme - analogs & derivatives Heme - chemistry Heme - metabolism Iron Kinetics Ligands Line spectra Oxidases Oxidation-Reduction Oxidoreductases - chemistry Oxygen Photolysis Physics Proteins quinol oxidase Spectral bands Spectrophotometry Spectrum analysis |
title | Femtosecond Resolution of Ligand-Heme Interactions in the High-Affinity Quinol Oxidase bd: A Di-Heme Active Site? |
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