Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani
Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspin...
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Veröffentlicht in: | Journal of proteome research 2012-12, Vol.11 (12), p.6197-6212 |
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creator | Liu, Zi-Chao Zhang, Rong Zhao, Feng Chen, Zhong-Ming Liu, Hao-Wen Wang, Yan-Jie Jiang, Ping Zhang, Yong Wu, Ying Ding, Jiu-Ping Lee, Wen-Hui Zhang, Yun |
description | Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom. |
doi_str_mv | 10.1021/pr300881d |
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However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.</description><identifier>ISSN: 1535-3893</identifier><identifier>EISSN: 1535-3907</identifier><identifier>DOI: 10.1021/pr300881d</identifier><identifier>PMID: 23148443</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Amino Acid Sequence ; Animals ; Anticoagulants - chemistry ; Anticoagulants - isolation & purification ; Arthropod Proteins - analysis ; Arthropod Proteins - chemistry ; Arthropod Proteins - genetics ; Arthropod Venoms - analysis ; Arthropod Venoms - chemistry ; Arthropod Venoms - genetics ; Arthropods - chemistry ; Cloning, Molecular ; Databases, Protein ; Enzyme Activation ; Enzyme Inhibitors - chemistry ; Enzyme Inhibitors - isolation & purification ; Exocrine Glands - chemistry ; Gene Expression Profiling - methods ; Gene Library ; HeLa Cells ; Hemolytic Agents - chemistry ; Hemolytic Agents - isolation & purification ; Humans ; Male ; Molecular Sequence Data ; Neurotoxins - analysis ; Neurotoxins - chemistry ; Neurotoxins - genetics ; Peptides - analysis ; Peptides - chemistry ; Phospholipases A2 - chemistry ; Phospholipases A2 - genetics ; Phospholipases A2 - isolation & purification ; Platelet Aggregation ; Proteomics - methods ; Rats ; Rats, Wistar ; Sequence Analysis, Protein ; Species Specificity ; Transcriptome ; Voltage-Gated Sodium Channel Agonists - chemistry ; Voltage-Gated Sodium Channel Agonists - isolation & purification</subject><ispartof>Journal of proteome research, 2012-12, Vol.11 (12), p.6197-6212</ispartof><rights>Copyright © 2012 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</citedby><cites>FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/pr300881d$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/pr300881d$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23148443$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Zi-Chao</creatorcontrib><creatorcontrib>Zhang, Rong</creatorcontrib><creatorcontrib>Zhao, Feng</creatorcontrib><creatorcontrib>Chen, Zhong-Ming</creatorcontrib><creatorcontrib>Liu, Hao-Wen</creatorcontrib><creatorcontrib>Wang, Yan-Jie</creatorcontrib><creatorcontrib>Jiang, Ping</creatorcontrib><creatorcontrib>Zhang, Yong</creatorcontrib><creatorcontrib>Wu, Ying</creatorcontrib><creatorcontrib>Ding, Jiu-Ping</creatorcontrib><creatorcontrib>Lee, Wen-Hui</creatorcontrib><creatorcontrib>Zhang, Yun</creatorcontrib><title>Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani</title><title>Journal of proteome research</title><addtitle>J. Proteome Res</addtitle><description>Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Anticoagulants - chemistry</subject><subject>Anticoagulants - isolation & purification</subject><subject>Arthropod Proteins - analysis</subject><subject>Arthropod Proteins - chemistry</subject><subject>Arthropod Proteins - genetics</subject><subject>Arthropod Venoms - analysis</subject><subject>Arthropod Venoms - chemistry</subject><subject>Arthropod Venoms - genetics</subject><subject>Arthropods - chemistry</subject><subject>Cloning, Molecular</subject><subject>Databases, Protein</subject><subject>Enzyme Activation</subject><subject>Enzyme Inhibitors - chemistry</subject><subject>Enzyme Inhibitors - isolation & purification</subject><subject>Exocrine Glands - chemistry</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Library</subject><subject>HeLa Cells</subject><subject>Hemolytic Agents - chemistry</subject><subject>Hemolytic Agents - isolation & purification</subject><subject>Humans</subject><subject>Male</subject><subject>Molecular Sequence Data</subject><subject>Neurotoxins - analysis</subject><subject>Neurotoxins - chemistry</subject><subject>Neurotoxins - genetics</subject><subject>Peptides - analysis</subject><subject>Peptides - chemistry</subject><subject>Phospholipases A2 - chemistry</subject><subject>Phospholipases A2 - genetics</subject><subject>Phospholipases A2 - isolation & purification</subject><subject>Platelet Aggregation</subject><subject>Proteomics - methods</subject><subject>Rats</subject><subject>Rats, Wistar</subject><subject>Sequence Analysis, Protein</subject><subject>Species Specificity</subject><subject>Transcriptome</subject><subject>Voltage-Gated Sodium Channel Agonists - chemistry</subject><subject>Voltage-Gated Sodium Channel Agonists - isolation & purification</subject><issn>1535-3893</issn><issn>1535-3907</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkE1LAzEQhoMotlYP_gHJxYOH1UmyabLHUuoHFBSsXpdsksWUNhsy7aH_3tXanjzNMO_DC_MQcs3gngFnDykLAK2ZOyFDJoUsRAXq9LDrSgzIBeISgEkF4pwMuGClLksxJG-fPnbrYKmJji6yiWhzSJvf0ySa1Q4D0q6lUx83IXnn6bvtVl3y0WVDcdtgCrEPkDr_ZUwMl-SsNSv0V39zRD4eZ4vpczF_fXqZTuaFEZptCgmgGj3mlealVYKDHeuWceBc6NIzpcBD0ydcKGmNKKVizBlVSVBt4_xYjMjdvtfmDjH7tk45rE3e1QzqHyv10UrP3uzZtG3W3h3Jg4YeuN0DxmK97La5_xz_KfoGBgpoOA</recordid><startdate>20121207</startdate><enddate>20121207</enddate><creator>Liu, Zi-Chao</creator><creator>Zhang, Rong</creator><creator>Zhao, Feng</creator><creator>Chen, Zhong-Ming</creator><creator>Liu, Hao-Wen</creator><creator>Wang, Yan-Jie</creator><creator>Jiang, Ping</creator><creator>Zhang, Yong</creator><creator>Wu, Ying</creator><creator>Ding, Jiu-Ping</creator><creator>Lee, Wen-Hui</creator><creator>Zhang, Yun</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20121207</creationdate><title>Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani</title><author>Liu, Zi-Chao ; Zhang, Rong ; Zhao, Feng ; Chen, Zhong-Ming ; Liu, Hao-Wen ; Wang, Yan-Jie ; Jiang, Ping ; Zhang, Yong ; Wu, Ying ; Ding, Jiu-Ping ; Lee, Wen-Hui ; Zhang, Yun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Anticoagulants - chemistry</topic><topic>Anticoagulants - isolation & purification</topic><topic>Arthropod Proteins - analysis</topic><topic>Arthropod Proteins - chemistry</topic><topic>Arthropod Proteins - genetics</topic><topic>Arthropod Venoms - analysis</topic><topic>Arthropod Venoms - chemistry</topic><topic>Arthropod Venoms - genetics</topic><topic>Arthropods - chemistry</topic><topic>Cloning, Molecular</topic><topic>Databases, Protein</topic><topic>Enzyme Activation</topic><topic>Enzyme Inhibitors - chemistry</topic><topic>Enzyme Inhibitors - isolation & purification</topic><topic>Exocrine Glands - chemistry</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Library</topic><topic>HeLa Cells</topic><topic>Hemolytic Agents - chemistry</topic><topic>Hemolytic Agents - isolation & purification</topic><topic>Humans</topic><topic>Male</topic><topic>Molecular Sequence Data</topic><topic>Neurotoxins - analysis</topic><topic>Neurotoxins - chemistry</topic><topic>Neurotoxins - genetics</topic><topic>Peptides - analysis</topic><topic>Peptides - chemistry</topic><topic>Phospholipases A2 - chemistry</topic><topic>Phospholipases A2 - genetics</topic><topic>Phospholipases A2 - isolation & purification</topic><topic>Platelet Aggregation</topic><topic>Proteomics - methods</topic><topic>Rats</topic><topic>Rats, Wistar</topic><topic>Sequence Analysis, Protein</topic><topic>Species Specificity</topic><topic>Transcriptome</topic><topic>Voltage-Gated Sodium Channel Agonists - chemistry</topic><topic>Voltage-Gated Sodium Channel Agonists - isolation & purification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Zi-Chao</creatorcontrib><creatorcontrib>Zhang, Rong</creatorcontrib><creatorcontrib>Zhao, Feng</creatorcontrib><creatorcontrib>Chen, Zhong-Ming</creatorcontrib><creatorcontrib>Liu, Hao-Wen</creatorcontrib><creatorcontrib>Wang, Yan-Jie</creatorcontrib><creatorcontrib>Jiang, Ping</creatorcontrib><creatorcontrib>Zhang, Yong</creatorcontrib><creatorcontrib>Wu, Ying</creatorcontrib><creatorcontrib>Ding, Jiu-Ping</creatorcontrib><creatorcontrib>Lee, Wen-Hui</creatorcontrib><creatorcontrib>Zhang, Yun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Journal of proteome research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Zi-Chao</au><au>Zhang, Rong</au><au>Zhao, Feng</au><au>Chen, Zhong-Ming</au><au>Liu, Hao-Wen</au><au>Wang, Yan-Jie</au><au>Jiang, Ping</au><au>Zhang, Yong</au><au>Wu, Ying</au><au>Ding, Jiu-Ping</au><au>Lee, Wen-Hui</au><au>Zhang, Yun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani</atitle><jtitle>Journal of proteome research</jtitle><addtitle>J. Proteome Res</addtitle><date>2012-12-07</date><risdate>2012</risdate><volume>11</volume><issue>12</issue><spage>6197</spage><epage>6212</epage><pages>6197-6212</pages><issn>1535-3893</issn><eissn>1535-3907</eissn><abstract>Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>23148443</pmid><doi>10.1021/pr300881d</doi><tpages>16</tpages></addata></record> |
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subjects | Amino Acid Sequence Animals Anticoagulants - chemistry Anticoagulants - isolation & purification Arthropod Proteins - analysis Arthropod Proteins - chemistry Arthropod Proteins - genetics Arthropod Venoms - analysis Arthropod Venoms - chemistry Arthropod Venoms - genetics Arthropods - chemistry Cloning, Molecular Databases, Protein Enzyme Activation Enzyme Inhibitors - chemistry Enzyme Inhibitors - isolation & purification Exocrine Glands - chemistry Gene Expression Profiling - methods Gene Library HeLa Cells Hemolytic Agents - chemistry Hemolytic Agents - isolation & purification Humans Male Molecular Sequence Data Neurotoxins - analysis Neurotoxins - chemistry Neurotoxins - genetics Peptides - analysis Peptides - chemistry Phospholipases A2 - chemistry Phospholipases A2 - genetics Phospholipases A2 - isolation & purification Platelet Aggregation Proteomics - methods Rats Rats, Wistar Sequence Analysis, Protein Species Specificity Transcriptome Voltage-Gated Sodium Channel Agonists - chemistry Voltage-Gated Sodium Channel Agonists - isolation & purification |
title | Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani |
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