Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani

Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspin...

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Veröffentlicht in:Journal of proteome research 2012-12, Vol.11 (12), p.6197-6212
Hauptverfasser: Liu, Zi-Chao, Zhang, Rong, Zhao, Feng, Chen, Zhong-Ming, Liu, Hao-Wen, Wang, Yan-Jie, Jiang, Ping, Zhang, Yong, Wu, Ying, Ding, Jiu-Ping, Lee, Wen-Hui, Zhang, Yun
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container_issue 12
container_start_page 6197
container_title Journal of proteome research
container_volume 11
creator Liu, Zi-Chao
Zhang, Rong
Zhao, Feng
Chen, Zhong-Ming
Liu, Hao-Wen
Wang, Yan-Jie
Jiang, Ping
Zhang, Yong
Wu, Ying
Ding, Jiu-Ping
Lee, Wen-Hui
Zhang, Yun
description Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.
doi_str_mv 10.1021/pr300881d
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However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.</description><identifier>ISSN: 1535-3893</identifier><identifier>EISSN: 1535-3907</identifier><identifier>DOI: 10.1021/pr300881d</identifier><identifier>PMID: 23148443</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Amino Acid Sequence ; Animals ; Anticoagulants - chemistry ; Anticoagulants - isolation &amp; purification ; Arthropod Proteins - analysis ; Arthropod Proteins - chemistry ; Arthropod Proteins - genetics ; Arthropod Venoms - analysis ; Arthropod Venoms - chemistry ; Arthropod Venoms - genetics ; Arthropods - chemistry ; Cloning, Molecular ; Databases, Protein ; Enzyme Activation ; Enzyme Inhibitors - chemistry ; Enzyme Inhibitors - isolation &amp; purification ; Exocrine Glands - chemistry ; Gene Expression Profiling - methods ; Gene Library ; HeLa Cells ; Hemolytic Agents - chemistry ; Hemolytic Agents - isolation &amp; purification ; Humans ; Male ; Molecular Sequence Data ; Neurotoxins - analysis ; Neurotoxins - chemistry ; Neurotoxins - genetics ; Peptides - analysis ; Peptides - chemistry ; Phospholipases A2 - chemistry ; Phospholipases A2 - genetics ; Phospholipases A2 - isolation &amp; purification ; Platelet Aggregation ; Proteomics - methods ; Rats ; Rats, Wistar ; Sequence Analysis, Protein ; Species Specificity ; Transcriptome ; Voltage-Gated Sodium Channel Agonists - chemistry ; Voltage-Gated Sodium Channel Agonists - isolation &amp; purification</subject><ispartof>Journal of proteome research, 2012-12, Vol.11 (12), p.6197-6212</ispartof><rights>Copyright © 2012 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</citedby><cites>FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/pr300881d$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/pr300881d$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2752,27053,27901,27902,56713,56763</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23148443$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Zi-Chao</creatorcontrib><creatorcontrib>Zhang, Rong</creatorcontrib><creatorcontrib>Zhao, Feng</creatorcontrib><creatorcontrib>Chen, Zhong-Ming</creatorcontrib><creatorcontrib>Liu, Hao-Wen</creatorcontrib><creatorcontrib>Wang, Yan-Jie</creatorcontrib><creatorcontrib>Jiang, Ping</creatorcontrib><creatorcontrib>Zhang, Yong</creatorcontrib><creatorcontrib>Wu, Ying</creatorcontrib><creatorcontrib>Ding, Jiu-Ping</creatorcontrib><creatorcontrib>Lee, Wen-Hui</creatorcontrib><creatorcontrib>Zhang, Yun</creatorcontrib><title>Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani</title><title>Journal of proteome research</title><addtitle>J. Proteome Res</addtitle><description>Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. 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Zhang, Rong ; Zhao, Feng ; Chen, Zhong-Ming ; Liu, Hao-Wen ; Wang, Yan-Jie ; Jiang, Ping ; Zhang, Yong ; Wu, Ying ; Ding, Jiu-Ping ; Lee, Wen-Hui ; Zhang, Yun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a381t-5007b8629824c7320c68f12022384e1770e0b4c72375ca345711da79507fbde63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Anticoagulants - chemistry</topic><topic>Anticoagulants - isolation &amp; purification</topic><topic>Arthropod Proteins - analysis</topic><topic>Arthropod Proteins - chemistry</topic><topic>Arthropod Proteins - genetics</topic><topic>Arthropod Venoms - analysis</topic><topic>Arthropod Venoms - chemistry</topic><topic>Arthropod Venoms - genetics</topic><topic>Arthropods - chemistry</topic><topic>Cloning, Molecular</topic><topic>Databases, Protein</topic><topic>Enzyme Activation</topic><topic>Enzyme Inhibitors - chemistry</topic><topic>Enzyme Inhibitors - isolation &amp; 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purification</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Zi-Chao</creatorcontrib><creatorcontrib>Zhang, Rong</creatorcontrib><creatorcontrib>Zhao, Feng</creatorcontrib><creatorcontrib>Chen, Zhong-Ming</creatorcontrib><creatorcontrib>Liu, Hao-Wen</creatorcontrib><creatorcontrib>Wang, Yan-Jie</creatorcontrib><creatorcontrib>Jiang, Ping</creatorcontrib><creatorcontrib>Zhang, Yong</creatorcontrib><creatorcontrib>Wu, Ying</creatorcontrib><creatorcontrib>Ding, Jiu-Ping</creatorcontrib><creatorcontrib>Lee, Wen-Hui</creatorcontrib><creatorcontrib>Zhang, Yun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Journal of proteome research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Zi-Chao</au><au>Zhang, Rong</au><au>Zhao, Feng</au><au>Chen, Zhong-Ming</au><au>Liu, Hao-Wen</au><au>Wang, Yan-Jie</au><au>Jiang, Ping</au><au>Zhang, Yong</au><au>Wu, Ying</au><au>Ding, Jiu-Ping</au><au>Lee, Wen-Hui</au><au>Zhang, Yun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani</atitle><jtitle>Journal of proteome research</jtitle><addtitle>J. Proteome Res</addtitle><date>2012-12-07</date><risdate>2012</risdate><volume>11</volume><issue>12</issue><spage>6197</spage><epage>6212</epage><pages>6197-6212</pages><issn>1535-3893</issn><eissn>1535-3907</eissn><abstract>Centipedes have venom glands in their first pair of limbs, and their venoms contain a large number of components with different biochemical and pharmacological properties. However, information about the compositions and functions of their venoms is largely unknown. In this study, Scolopendra subspinipes dehaani venoms were systematically investigated by transcriptomic and proteomic analysis coupled with biological function assays. After random screening approximately 1500 independent clones, 1122 full length cDNA sequences, which encode 543 different proteins, were cloned from a constructed cDNA library using a pair of venom glands from a single centipede species. Neurotoxins, ion channel acting components and venom allergens were the main fractions of the crude venom as revealed by transcriptomic analysis. Meanwhile, 40 proteins/peptides were purified and characterized from crude venom of S. subspinipes dehaani. The N-terminal amino acid sequencing and mass spectrum results of 29 out of these 40 proteins or peptides matched well with their corresponding cDNAs. The purified proteins/peptides showed different pharmacological properties, including the following: (1) platelet aggregating activity; (2) anticoagulant activity; (3) phospholipase A2 activity; (4) trypsin inhibiting activity; (5) voltage-gated potassium channel activities; (6) voltage-gated sodium channel activities; (7) voltage-gated calcium channel activities. Most of them showed no significant similarity to other protein sequences deposited in the known public database. This work provides the largest number of protein or peptide candidates with medical-pharmaceutical significance and reveals the toxin nature of centipede S. subspinipes dehaani venom.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>23148443</pmid><doi>10.1021/pr300881d</doi><tpages>16</tpages></addata></record>
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ispartof Journal of proteome research, 2012-12, Vol.11 (12), p.6197-6212
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source ACS Publications; MEDLINE
subjects Amino Acid Sequence
Animals
Anticoagulants - chemistry
Anticoagulants - isolation & purification
Arthropod Proteins - analysis
Arthropod Proteins - chemistry
Arthropod Proteins - genetics
Arthropod Venoms - analysis
Arthropod Venoms - chemistry
Arthropod Venoms - genetics
Arthropods - chemistry
Cloning, Molecular
Databases, Protein
Enzyme Activation
Enzyme Inhibitors - chemistry
Enzyme Inhibitors - isolation & purification
Exocrine Glands - chemistry
Gene Expression Profiling - methods
Gene Library
HeLa Cells
Hemolytic Agents - chemistry
Hemolytic Agents - isolation & purification
Humans
Male
Molecular Sequence Data
Neurotoxins - analysis
Neurotoxins - chemistry
Neurotoxins - genetics
Peptides - analysis
Peptides - chemistry
Phospholipases A2 - chemistry
Phospholipases A2 - genetics
Phospholipases A2 - isolation & purification
Platelet Aggregation
Proteomics - methods
Rats
Rats, Wistar
Sequence Analysis, Protein
Species Specificity
Transcriptome
Voltage-Gated Sodium Channel Agonists - chemistry
Voltage-Gated Sodium Channel Agonists - isolation & purification
title Venomic and Transcriptomic Analysis of Centipede Scolopendra subspinipes dehaani
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