Complex with a Phage Display-Derived Peptide Provides Insight into the Function of Insulin-like Growth Factor I
The dramatic improvement in the NMR spectra of insulin-like growth factor I (IGF-I) in the presence of a peptide identified from a phage display library has allowed for the first time the determination of a high-resolution solution structure for much of IGF-I. The three helices of IGF-I in this comp...
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Veröffentlicht in: | Biochemistry (Easton) 2003-08, Vol.42 (31), p.9324-9334 |
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creator | Schaffer, Michelle L Deshayes, Kurt Nakamura, Gerald Sidhu, Sachdev Skelton, Nicholas J |
description | The dramatic improvement in the NMR spectra of insulin-like growth factor I (IGF-I) in the presence of a peptide identified from a phage display library has allowed for the first time the determination of a high-resolution solution structure for much of IGF-I. The three helices of IGF-I in this complex have an arrangement similar to that seen in high-resolution crystal structures of IGF-I and insulin, although there are differences in the conformation and precise location of helix 3. A cluster of hydrophobic and basic side chains within the turn−helix motif of the peptide contact a hydrophobic patch on helices 1 and 3 of IGF-I. The importance of this patch for tight binding was verified using alanine scanning mutagenesis of the peptide in two different phage display formats. Consistent with its antagonistic activity, the peptide binds to a region implicated by mutagenesis studies to be important for association with IGF binding proteins (IGFBPs). The ability of the peptide to also inhibit signaling has important implications for the manner in which IGF-I interacts with its receptor. Interestingly, the peptide uses the same binding site as detergent and a fragment of IGFBP-5 identified in other IGF-I complexes. The ligand-induced structural variability of helix 3 in these complexes suggests that exchange between such conformations may be the source of the dynamic nature of free IGF-I and likely has functional significance for the ability of IGF-I to recognize two signaling receptors and six binding proteins with high affinity. |
doi_str_mv | 10.1021/bi034386c |
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The three helices of IGF-I in this complex have an arrangement similar to that seen in high-resolution crystal structures of IGF-I and insulin, although there are differences in the conformation and precise location of helix 3. A cluster of hydrophobic and basic side chains within the turn−helix motif of the peptide contact a hydrophobic patch on helices 1 and 3 of IGF-I. The importance of this patch for tight binding was verified using alanine scanning mutagenesis of the peptide in two different phage display formats. Consistent with its antagonistic activity, the peptide binds to a region implicated by mutagenesis studies to be important for association with IGF binding proteins (IGFBPs). The ability of the peptide to also inhibit signaling has important implications for the manner in which IGF-I interacts with its receptor. Interestingly, the peptide uses the same binding site as detergent and a fragment of IGFBP-5 identified in other IGF-I complexes. The ligand-induced structural variability of helix 3 in these complexes suggests that exchange between such conformations may be the source of the dynamic nature of free IGF-I and likely has functional significance for the ability of IGF-I to recognize two signaling receptors and six binding proteins with high affinity.</description><identifier>ISSN: 0006-2960</identifier><identifier>EISSN: 1520-4995</identifier><identifier>DOI: 10.1021/bi034386c</identifier><identifier>PMID: 12899619</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Alanine - genetics ; Amino Acid Sequence ; Amino Acid Substitution - genetics ; Bacteriophage M13 - metabolism ; Binding, Competitive - genetics ; Conserved Sequence ; Crystallography, X-Ray ; Humans ; Insulin - chemistry ; Insulin - metabolism ; Insulin-Like Growth Factor Binding Protein 5 - metabolism ; Insulin-Like Growth Factor I - metabolism ; Kinetics ; Ligands ; Molecular Mimicry ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Peptide Fragments - chemical synthesis ; Peptide Fragments - genetics ; Peptide Fragments - metabolism ; Peptide Library ; Protein Binding - genetics ; Protein Structure, Secondary ; Sequence Homology, Amino Acid ; Structure-Activity Relationship ; Surface Properties</subject><ispartof>Biochemistry (Easton), 2003-08, Vol.42 (31), p.9324-9334</ispartof><rights>Copyright © 2003 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a349t-fdfd8e470ac7a04e8276cee587c566bc9e9129472426a28e9f9033ee8c61874b3</citedby><cites>FETCH-LOGICAL-a349t-fdfd8e470ac7a04e8276cee587c566bc9e9129472426a28e9f9033ee8c61874b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/bi034386c$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/bi034386c$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,780,784,2763,27075,27923,27924,56737,56787</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12899619$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Schaffer, Michelle L</creatorcontrib><creatorcontrib>Deshayes, Kurt</creatorcontrib><creatorcontrib>Nakamura, Gerald</creatorcontrib><creatorcontrib>Sidhu, Sachdev</creatorcontrib><creatorcontrib>Skelton, Nicholas J</creatorcontrib><title>Complex with a Phage Display-Derived Peptide Provides Insight into the Function of Insulin-like Growth Factor I</title><title>Biochemistry (Easton)</title><addtitle>Biochemistry</addtitle><description>The dramatic improvement in the NMR spectra of insulin-like growth factor I (IGF-I) in the presence of a peptide identified from a phage display library has allowed for the first time the determination of a high-resolution solution structure for much of IGF-I. The three helices of IGF-I in this complex have an arrangement similar to that seen in high-resolution crystal structures of IGF-I and insulin, although there are differences in the conformation and precise location of helix 3. A cluster of hydrophobic and basic side chains within the turn−helix motif of the peptide contact a hydrophobic patch on helices 1 and 3 of IGF-I. The importance of this patch for tight binding was verified using alanine scanning mutagenesis of the peptide in two different phage display formats. Consistent with its antagonistic activity, the peptide binds to a region implicated by mutagenesis studies to be important for association with IGF binding proteins (IGFBPs). The ability of the peptide to also inhibit signaling has important implications for the manner in which IGF-I interacts with its receptor. Interestingly, the peptide uses the same binding site as detergent and a fragment of IGFBP-5 identified in other IGF-I complexes. The ligand-induced structural variability of helix 3 in these complexes suggests that exchange between such conformations may be the source of the dynamic nature of free IGF-I and likely has functional significance for the ability of IGF-I to recognize two signaling receptors and six binding proteins with high affinity.</description><subject>Alanine - genetics</subject><subject>Amino Acid Sequence</subject><subject>Amino Acid Substitution - genetics</subject><subject>Bacteriophage M13 - metabolism</subject><subject>Binding, Competitive - genetics</subject><subject>Conserved Sequence</subject><subject>Crystallography, X-Ray</subject><subject>Humans</subject><subject>Insulin - chemistry</subject><subject>Insulin - metabolism</subject><subject>Insulin-Like Growth Factor Binding Protein 5 - metabolism</subject><subject>Insulin-Like Growth Factor I - metabolism</subject><subject>Kinetics</subject><subject>Ligands</subject><subject>Molecular Mimicry</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis, Site-Directed</subject><subject>Peptide Fragments - chemical synthesis</subject><subject>Peptide Fragments - genetics</subject><subject>Peptide Fragments - metabolism</subject><subject>Peptide Library</subject><subject>Protein Binding - genetics</subject><subject>Protein Structure, Secondary</subject><subject>Sequence Homology, Amino Acid</subject><subject>Structure-Activity Relationship</subject><subject>Surface Properties</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkD9PwzAUxC0EglIY-ALICwNDwHYcOx6hpaUSiErAbLnOCzWkcWS7_Pn2pCqChel0up_u6R1CJ5RcUMLo5cKRnOelsDtoQAtGMq5UsYsGhBCRMSXIATqM8bW3nEi-jw4oK5USVA2QH_lV18An_nBpiQ2eL80L4LGLXWO-sjEE9w4VnkOXXAV4Hvx7rxHP2uhelgm7NnmcloAn69Ym51vs6024blybNe4N8DT4j755YmzyAc-O0F5tmgjHPzpEz5Obp9FtdvcwnY2u7jKTc5WyuqqrErgkxkpDOJRMCgtQlNIWQiysAkWZ4pJxJgwrQdWK5DlAaQUtJV_kQ3S-7bXBxxig1l1wKxO-NCV6M5r-Ha1nT7dst16soPojf1bqgWwLuJjg8zc34U0LmctCP80fdTElj9dqfK-nPX-25Y2N-tWvQ9u_-s_hb4T0gpQ</recordid><startdate>20030812</startdate><enddate>20030812</enddate><creator>Schaffer, Michelle L</creator><creator>Deshayes, Kurt</creator><creator>Nakamura, Gerald</creator><creator>Sidhu, Sachdev</creator><creator>Skelton, Nicholas J</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20030812</creationdate><title>Complex with a Phage Display-Derived Peptide Provides Insight into the Function of Insulin-like Growth Factor I</title><author>Schaffer, Michelle L ; Deshayes, Kurt ; Nakamura, Gerald ; Sidhu, Sachdev ; Skelton, Nicholas J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a349t-fdfd8e470ac7a04e8276cee587c566bc9e9129472426a28e9f9033ee8c61874b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Alanine - genetics</topic><topic>Amino Acid Sequence</topic><topic>Amino Acid Substitution - genetics</topic><topic>Bacteriophage M13 - metabolism</topic><topic>Binding, Competitive - genetics</topic><topic>Conserved Sequence</topic><topic>Crystallography, X-Ray</topic><topic>Humans</topic><topic>Insulin - chemistry</topic><topic>Insulin - metabolism</topic><topic>Insulin-Like Growth Factor Binding Protein 5 - metabolism</topic><topic>Insulin-Like Growth Factor I - metabolism</topic><topic>Kinetics</topic><topic>Ligands</topic><topic>Molecular Mimicry</topic><topic>Molecular Sequence Data</topic><topic>Mutagenesis, Site-Directed</topic><topic>Peptide Fragments - chemical synthesis</topic><topic>Peptide Fragments - genetics</topic><topic>Peptide Fragments - metabolism</topic><topic>Peptide Library</topic><topic>Protein Binding - genetics</topic><topic>Protein Structure, Secondary</topic><topic>Sequence Homology, Amino Acid</topic><topic>Structure-Activity Relationship</topic><topic>Surface Properties</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Schaffer, Michelle L</creatorcontrib><creatorcontrib>Deshayes, Kurt</creatorcontrib><creatorcontrib>Nakamura, Gerald</creatorcontrib><creatorcontrib>Sidhu, Sachdev</creatorcontrib><creatorcontrib>Skelton, Nicholas J</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Schaffer, Michelle L</au><au>Deshayes, Kurt</au><au>Nakamura, Gerald</au><au>Sidhu, Sachdev</au><au>Skelton, Nicholas J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complex with a Phage Display-Derived Peptide Provides Insight into the Function of Insulin-like Growth Factor I</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>2003-08-12</date><risdate>2003</risdate><volume>42</volume><issue>31</issue><spage>9324</spage><epage>9334</epage><pages>9324-9334</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>The dramatic improvement in the NMR spectra of insulin-like growth factor I (IGF-I) in the presence of a peptide identified from a phage display library has allowed for the first time the determination of a high-resolution solution structure for much of IGF-I. The three helices of IGF-I in this complex have an arrangement similar to that seen in high-resolution crystal structures of IGF-I and insulin, although there are differences in the conformation and precise location of helix 3. A cluster of hydrophobic and basic side chains within the turn−helix motif of the peptide contact a hydrophobic patch on helices 1 and 3 of IGF-I. The importance of this patch for tight binding was verified using alanine scanning mutagenesis of the peptide in two different phage display formats. Consistent with its antagonistic activity, the peptide binds to a region implicated by mutagenesis studies to be important for association with IGF binding proteins (IGFBPs). The ability of the peptide to also inhibit signaling has important implications for the manner in which IGF-I interacts with its receptor. Interestingly, the peptide uses the same binding site as detergent and a fragment of IGFBP-5 identified in other IGF-I complexes. The ligand-induced structural variability of helix 3 in these complexes suggests that exchange between such conformations may be the source of the dynamic nature of free IGF-I and likely has functional significance for the ability of IGF-I to recognize two signaling receptors and six binding proteins with high affinity.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>12899619</pmid><doi>10.1021/bi034386c</doi><tpages>11</tpages></addata></record> |
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subjects | Alanine - genetics Amino Acid Sequence Amino Acid Substitution - genetics Bacteriophage M13 - metabolism Binding, Competitive - genetics Conserved Sequence Crystallography, X-Ray Humans Insulin - chemistry Insulin - metabolism Insulin-Like Growth Factor Binding Protein 5 - metabolism Insulin-Like Growth Factor I - metabolism Kinetics Ligands Molecular Mimicry Molecular Sequence Data Mutagenesis, Site-Directed Peptide Fragments - chemical synthesis Peptide Fragments - genetics Peptide Fragments - metabolism Peptide Library Protein Binding - genetics Protein Structure, Secondary Sequence Homology, Amino Acid Structure-Activity Relationship Surface Properties |
title | Complex with a Phage Display-Derived Peptide Provides Insight into the Function of Insulin-like Growth Factor I |
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