Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis

Primary and secondary kD/kT and kH/kT kinetic isotope effects have been studied as a probe of hydrogen tunneling in the oxidation of benzyl alcohol catalyzed by horse liver alcohol dehydrogenase (LADH). In the case of the wild-type enzyme, isotope effects at 25 degrees C do not clearly support hydro...

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Veröffentlicht in:Biochemistry (Easton) 1993-06, Vol.32 (21), p.5503-5507
Hauptverfasser: Bahnson, Brian J, Park, Doo Hong, Kim, Keehyuk, Plapp, Bryce V, Klinman, Judith P
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container_issue 21
container_start_page 5503
container_title Biochemistry (Easton)
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creator Bahnson, Brian J
Park, Doo Hong
Kim, Keehyuk
Plapp, Bryce V
Klinman, Judith P
description Primary and secondary kD/kT and kH/kT kinetic isotope effects have been studied as a probe of hydrogen tunneling in the oxidation of benzyl alcohol catalyzed by horse liver alcohol dehydrogenase (LADH). In the case of the wild-type enzyme, isotope effects at 25 degrees C do not clearly support hydrogen tunneling; this result is consistent with a reaction rate that is partially limited by the release of product benzaldehyde. The three-dimensional structure for LADH was used to design site-directed mutations in an effort to enhance the rate of the product release step and to "unmask" tunneling. Substitutions that increased the size of the alcohol binding pocket resulted in minor changes in isotope effects. By contrast, reduction in the size of the alcohol binding pocket through substitution at residues 57 and 93, which are in van der Waals contact with bound alcohol substrate, produced a clear demonstration of protium tunneling from the breakdown of the semiclassical relationship between kD/kT and kH/kT isotope effects. The temperature dependence of kD/kT isotope effects has also been pursued, leading to the conclusion that tunneling does, in fact, occur in the reaction catalyzed by wild-type LADH. Despite the unmasking of protium tunneling in site-directed mutants, substitutions that decrease the size of the alcohol pocket appear to result in less extensive tunneling in the hydride transfer. It is noteworthy that the mutant enzyme (Leu57-->Phe), which shows the greatest evidence of tunneling, has the same catalytic efficiency (Vmax/Km) as the wild-type enzyme.
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In the case of the wild-type enzyme, isotope effects at 25 degrees C do not clearly support hydrogen tunneling; this result is consistent with a reaction rate that is partially limited by the release of product benzaldehyde. The three-dimensional structure for LADH was used to design site-directed mutations in an effort to enhance the rate of the product release step and to "unmask" tunneling. Substitutions that increased the size of the alcohol binding pocket resulted in minor changes in isotope effects. By contrast, reduction in the size of the alcohol binding pocket through substitution at residues 57 and 93, which are in van der Waals contact with bound alcohol substrate, produced a clear demonstration of protium tunneling from the breakdown of the semiclassical relationship between kD/kT and kH/kT isotope effects. The temperature dependence of kD/kT isotope effects has also been pursued, leading to the conclusion that tunneling does, in fact, occur in the reaction catalyzed by wild-type LADH. Despite the unmasking of protium tunneling in site-directed mutants, substitutions that decrease the size of the alcohol pocket appear to result in less extensive tunneling in the hydride transfer. 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The temperature dependence of kD/kT isotope effects has also been pursued, leading to the conclusion that tunneling does, in fact, occur in the reaction catalyzed by wild-type LADH. Despite the unmasking of protium tunneling in site-directed mutants, substitutions that decrease the size of the alcohol pocket appear to result in less extensive tunneling in the hydride transfer. 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Psychology</topic><topic>Horses</topic><topic>Kinetics</topic><topic>Liver - enzymology</topic><topic>Mathematics</topic><topic>Models, Molecular</topic><topic>Mutagenesis, Site-Directed</topic><topic>NAD - metabolism</topic><topic>Oxidoreductases</topic><topic>Protein Structure, Secondary</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - metabolism</topic><topic>Thermodynamics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bahnson, Brian J</creatorcontrib><creatorcontrib>Park, Doo Hong</creatorcontrib><creatorcontrib>Kim, Keehyuk</creatorcontrib><creatorcontrib>Plapp, Bryce V</creatorcontrib><creatorcontrib>Klinman, Judith P</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bahnson, Brian J</au><au>Park, Doo Hong</au><au>Kim, Keehyuk</au><au>Plapp, Bryce V</au><au>Klinman, Judith P</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>1993-06-01</date><risdate>1993</risdate><volume>32</volume><issue>21</issue><spage>5503</spage><epage>5507</epage><pages>5503-5507</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>Primary and secondary kD/kT and kH/kT kinetic isotope effects have been studied as a probe of hydrogen tunneling in the oxidation of benzyl alcohol catalyzed by horse liver alcohol dehydrogenase (LADH). 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The temperature dependence of kD/kT isotope effects has also been pursued, leading to the conclusion that tunneling does, in fact, occur in the reaction catalyzed by wild-type LADH. Despite the unmasking of protium tunneling in site-directed mutants, substitutions that decrease the size of the alcohol pocket appear to result in less extensive tunneling in the hydride transfer. It is noteworthy that the mutant enzyme (Leu57--&gt;Phe), which shows the greatest evidence of tunneling, has the same catalytic efficiency (Vmax/Km) as the wild-type enzyme.</abstract><cop>Washington, DC</cop><pub>American Chemical Society</pub><pmid>8504071</pmid><doi>10.1021/bi00072a003</doi><tpages>5</tpages></addata></record>
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subjects Alcohol Dehydrogenase - chemistry
Alcohol Dehydrogenase - genetics
Alcohol Dehydrogenase - metabolism
Amino Acid Sequence
Analytical, structural and metabolic biochemistry
Animals
Binding Sites
Biological and medical sciences
Enzymes and enzyme inhibitors
Fundamental and applied biological sciences. Psychology
Horses
Kinetics
Liver - enzymology
Mathematics
Models, Molecular
Mutagenesis, Site-Directed
NAD - metabolism
Oxidoreductases
Protein Structure, Secondary
Recombinant Proteins - chemistry
Recombinant Proteins - metabolism
Thermodynamics
title Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis
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