Molecular Characterization of Tobacco Squalene Synthase and Regulation in Response to Fungal Elicitor

The enzyme squalene synthase (SS) represents the first commitment of carbon from the general isoprenoid pathway toward sterol biosynthesis and is a potential point for regulation of sterol biosynthesis. The isolation and characterization of tobacco (Nicotiana tabacum) squalene synthase (TSS) cDNA an...

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Veröffentlicht in:Archives of biochemistry and biophysics 1998-01, Vol.349 (2), p.205-215
Hauptverfasser: Devarenne, Timothy P., Shin, Dong Hyun, Back, Kyoungwhan, Yin, Shaohui, Chappell, Joseph
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container_issue 2
container_start_page 205
container_title Archives of biochemistry and biophysics
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creator Devarenne, Timothy P.
Shin, Dong Hyun
Back, Kyoungwhan
Yin, Shaohui
Chappell, Joseph
description The enzyme squalene synthase (SS) represents the first commitment of carbon from the general isoprenoid pathway toward sterol biosynthesis and is a potential point for regulation of sterol biosynthesis. The isolation and characterization of tobacco (Nicotiana tabacum) squalene synthase (TSS) cDNA and genomic DNA clones, as well as determination of the steady state level of TSS mRNA in response to elicitor treatment, were investigated. cDNA clones for TSS were isolated from poly (A)+RNA using a reverse transcription/polymerase chain reaction (RT/PCR) method. A 1233-bp cDNA clone was generated that contained an open reading frame of 411 amino acids giving a predicted molecular mass of 46.9 kDa. Comparison of the TSS deduced amino acid sequence with currently described SS from different species showed the highest identity withNicotiana benthamiana(97%), followed byGlycyrrhiza glabra(81%),Arabidopsis thaliana(74%), rat (40%), and yeast (37%). Expression of a soluble form of the TSS enzyme with enzymatic activity inEscherichia coliwas achieved by truncating 24 hydrophobic amino acids at the carboxy terminus. Characterization of genomic TSS (gTSS) revealed a gene of 7.086 kb with a complex organization of small exons and large introns not typical of plant genes. Southern blot hybridization indicated only two copies of the SS gene in the tobacco genome. Treatment of tobacco cell suspension cultures with a fungal elicitor dramatically reduced TSS enzymatic activity, lowering it to zero within 24 h. Analysis of TSS mRNA levels, by RNA blot hybridization and primer extension assays, in elicitor-treated cells indicated that the transcript level remained largely unchanged over this 24-h period. These results suggest that the suppression of TSS enzyme activity in elicitor-treated cells may result from a posttranscriptional modification of TSS.
doi_str_mv 10.1006/abbi.1997.0463
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The isolation and characterization of tobacco (Nicotiana tabacum) squalene synthase (TSS) cDNA and genomic DNA clones, as well as determination of the steady state level of TSS mRNA in response to elicitor treatment, were investigated. cDNA clones for TSS were isolated from poly (A)+RNA using a reverse transcription/polymerase chain reaction (RT/PCR) method. A 1233-bp cDNA clone was generated that contained an open reading frame of 411 amino acids giving a predicted molecular mass of 46.9 kDa. Comparison of the TSS deduced amino acid sequence with currently described SS from different species showed the highest identity withNicotiana benthamiana(97%), followed byGlycyrrhiza glabra(81%),Arabidopsis thaliana(74%), rat (40%), and yeast (37%). Expression of a soluble form of the TSS enzyme with enzymatic activity inEscherichia coliwas achieved by truncating 24 hydrophobic amino acids at the carboxy terminus. Characterization of genomic TSS (gTSS) revealed a gene of 7.086 kb with a complex organization of small exons and large introns not typical of plant genes. Southern blot hybridization indicated only two copies of the SS gene in the tobacco genome. Treatment of tobacco cell suspension cultures with a fungal elicitor dramatically reduced TSS enzymatic activity, lowering it to zero within 24 h. Analysis of TSS mRNA levels, by RNA blot hybridization and primer extension assays, in elicitor-treated cells indicated that the transcript level remained largely unchanged over this 24-h period. 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The isolation and characterization of tobacco (Nicotiana tabacum) squalene synthase (TSS) cDNA and genomic DNA clones, as well as determination of the steady state level of TSS mRNA in response to elicitor treatment, were investigated. cDNA clones for TSS were isolated from poly (A)+RNA using a reverse transcription/polymerase chain reaction (RT/PCR) method. A 1233-bp cDNA clone was generated that contained an open reading frame of 411 amino acids giving a predicted molecular mass of 46.9 kDa. Comparison of the TSS deduced amino acid sequence with currently described SS from different species showed the highest identity withNicotiana benthamiana(97%), followed byGlycyrrhiza glabra(81%),Arabidopsis thaliana(74%), rat (40%), and yeast (37%). Expression of a soluble form of the TSS enzyme with enzymatic activity inEscherichia coliwas achieved by truncating 24 hydrophobic amino acids at the carboxy terminus. Characterization of genomic TSS (gTSS) revealed a gene of 7.086 kb with a complex organization of small exons and large introns not typical of plant genes. Southern blot hybridization indicated only two copies of the SS gene in the tobacco genome. Treatment of tobacco cell suspension cultures with a fungal elicitor dramatically reduced TSS enzymatic activity, lowering it to zero within 24 h. Analysis of TSS mRNA levels, by RNA blot hybridization and primer extension assays, in elicitor-treated cells indicated that the transcript level remained largely unchanged over this 24-h period. 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Shin, Dong Hyun ; Back, Kyoungwhan ; Yin, Shaohui ; Chappell, Joseph</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c405t-8831f13dbb19b2de7b92b1af21c4d583e9c23effc2d40732ee5d541b8bb2c93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Arabidopsis - enzymology</topic><topic>Base Sequence</topic><topic>Cloning, Molecular</topic><topic>Consensus Sequence</topic><topic>Escherichia coli</topic><topic>Exons</topic><topic>Farnesyl-Diphosphate Farnesyltransferase - biosynthesis</topic><topic>Farnesyl-Diphosphate Farnesyltransferase - chemistry</topic><topic>Farnesyl-Diphosphate Farnesyltransferase - genetics</topic><topic>Fungal Proteins - pharmacology</topic><topic>Gene Expression Regulation, Enzymologic - drug effects</topic><topic>Gene Expression Regulation, Plant - drug effects</topic><topic>Genes, Plant</topic><topic>Introns</topic><topic>Molecular Sequence Data</topic><topic>Molecular Weight</topic><topic>Nicotiana - enzymology</topic><topic>Nicotiana - genetics</topic><topic>Nicotiana tabacum</topic><topic>Plants, Toxic</topic><topic>Polymerase Chain Reaction</topic><topic>Rats</topic><topic>Recombinant Proteins - biosynthesis</topic><topic>Recombinant Proteins - chemistry</topic><topic>Saccharomyces cerevisiae - enzymology</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>squalene synthase</topic><topic>sterol regulation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Devarenne, Timothy P.</creatorcontrib><creatorcontrib>Shin, Dong Hyun</creatorcontrib><creatorcontrib>Back, Kyoungwhan</creatorcontrib><creatorcontrib>Yin, Shaohui</creatorcontrib><creatorcontrib>Chappell, Joseph</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Archives of biochemistry and biophysics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Devarenne, Timothy P.</au><au>Shin, Dong Hyun</au><au>Back, Kyoungwhan</au><au>Yin, Shaohui</au><au>Chappell, Joseph</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular Characterization of Tobacco Squalene Synthase and Regulation in Response to Fungal Elicitor</atitle><jtitle>Archives of biochemistry and biophysics</jtitle><addtitle>Arch Biochem Biophys</addtitle><date>1998-01-15</date><risdate>1998</risdate><volume>349</volume><issue>2</issue><spage>205</spage><epage>215</epage><pages>205-215</pages><issn>0003-9861</issn><eissn>1096-0384</eissn><abstract>The enzyme squalene synthase (SS) represents the first commitment of carbon from the general isoprenoid pathway toward sterol biosynthesis and is a potential point for regulation of sterol biosynthesis. The isolation and characterization of tobacco (Nicotiana tabacum) squalene synthase (TSS) cDNA and genomic DNA clones, as well as determination of the steady state level of TSS mRNA in response to elicitor treatment, were investigated. cDNA clones for TSS were isolated from poly (A)+RNA using a reverse transcription/polymerase chain reaction (RT/PCR) method. A 1233-bp cDNA clone was generated that contained an open reading frame of 411 amino acids giving a predicted molecular mass of 46.9 kDa. Comparison of the TSS deduced amino acid sequence with currently described SS from different species showed the highest identity withNicotiana benthamiana(97%), followed byGlycyrrhiza glabra(81%),Arabidopsis thaliana(74%), rat (40%), and yeast (37%). Expression of a soluble form of the TSS enzyme with enzymatic activity inEscherichia coliwas achieved by truncating 24 hydrophobic amino acids at the carboxy terminus. Characterization of genomic TSS (gTSS) revealed a gene of 7.086 kb with a complex organization of small exons and large introns not typical of plant genes. Southern blot hybridization indicated only two copies of the SS gene in the tobacco genome. Treatment of tobacco cell suspension cultures with a fungal elicitor dramatically reduced TSS enzymatic activity, lowering it to zero within 24 h. Analysis of TSS mRNA levels, by RNA blot hybridization and primer extension assays, in elicitor-treated cells indicated that the transcript level remained largely unchanged over this 24-h period. These results suggest that the suppression of TSS enzyme activity in elicitor-treated cells may result from a posttranscriptional modification of TSS.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>9448707</pmid><doi>10.1006/abbi.1997.0463</doi><tpages>11</tpages></addata></record>
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ispartof Archives of biochemistry and biophysics, 1998-01, Vol.349 (2), p.205-215
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subjects Amino Acid Sequence
Animals
Arabidopsis - enzymology
Base Sequence
Cloning, Molecular
Consensus Sequence
Escherichia coli
Exons
Farnesyl-Diphosphate Farnesyltransferase - biosynthesis
Farnesyl-Diphosphate Farnesyltransferase - chemistry
Farnesyl-Diphosphate Farnesyltransferase - genetics
Fungal Proteins - pharmacology
Gene Expression Regulation, Enzymologic - drug effects
Gene Expression Regulation, Plant - drug effects
Genes, Plant
Introns
Molecular Sequence Data
Molecular Weight
Nicotiana - enzymology
Nicotiana - genetics
Nicotiana tabacum
Plants, Toxic
Polymerase Chain Reaction
Rats
Recombinant Proteins - biosynthesis
Recombinant Proteins - chemistry
Saccharomyces cerevisiae - enzymology
Sequence Alignment
Sequence Homology, Amino Acid
squalene synthase
sterol regulation
title Molecular Characterization of Tobacco Squalene Synthase and Regulation in Response to Fungal Elicitor
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