Development of a novel 10-echo multi-contrast sequence based on EPIK to deliver simultaneous quantification of T 2 and T 2 with application to oxygen extraction fraction
The simultaneous quantification of T and T * maps based on fast sequences for combined GE and SE acquisition has rekindled research and clinical interest by offering a wide range of attractive applications, e.g., dynamic tracking of oxygen extraction fraction (OEF). However, previously published met...
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Veröffentlicht in: | Magnetic resonance in medicine 2022-10, Vol.88 (4), p.1608-1623 |
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container_title | Magnetic resonance in medicine |
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creator | Küppers, Fabian Yun, Seong Dae Shah, N Jon |
description | The simultaneous quantification of T
and T
* maps based on fast sequences for combined GE and SE acquisition has rekindled research and clinical interest by offering a wide range of attractive applications, e.g., dynamic tracking of oxygen extraction fraction (OEF). However, previously published methods based on EPI-readouts have been hindered by resolution and the number of acquired echoes.
This work presents a novel 10-echo GE-SE EPIK (EPI with keyhole) sequence for the rapid quantification of T
'. T
/T
* maps from the GE-SE EPIK sequence were validated using three phantoms and 15 volunteers at 3T. The incorporation of a sliding window approach, combined with the full sampling of the k-space center inherent to EPIK, enables a high effective temporal resolution. That is, for an eight-slice breath-hold experiment, a temporal sampling rate of eight reconstructed slices per 1.1 s.
In comparison with repeated single-echo SE, multi-echo GE, and spectroscopy methods, the GE-SE EPIK sequence shows good agreement in quantifying T
/T
* values, while the gray matter/white matter separation yielded the expected contrast differentiation. The OEF was calculated with a view to an initial application with clinical relevance, producing results comparable to those in the literature and with good sensitivity in breath-hold experiments.
GE-SE EPIK provides increased resolution and more echoes, including two SEs, than comparable sequences. Moreover, GE-SE EPIK achieves this within an acquisition time of 57 s for 20 slices (matrix size = 128×128; FOV = 24 cm) and with a reasonably short TE for the final echo (114 ms). The sequence can dynamically track OEF changes in a breath-hold experiment. |
doi_str_mv | 10.1002/mrm.29305 |
format | Article |
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and T
* maps based on fast sequences for combined GE and SE acquisition has rekindled research and clinical interest by offering a wide range of attractive applications, e.g., dynamic tracking of oxygen extraction fraction (OEF). However, previously published methods based on EPI-readouts have been hindered by resolution and the number of acquired echoes.
This work presents a novel 10-echo GE-SE EPIK (EPI with keyhole) sequence for the rapid quantification of T
'. T
/T
* maps from the GE-SE EPIK sequence were validated using three phantoms and 15 volunteers at 3T. The incorporation of a sliding window approach, combined with the full sampling of the k-space center inherent to EPIK, enables a high effective temporal resolution. That is, for an eight-slice breath-hold experiment, a temporal sampling rate of eight reconstructed slices per 1.1 s.
In comparison with repeated single-echo SE, multi-echo GE, and spectroscopy methods, the GE-SE EPIK sequence shows good agreement in quantifying T
/T
* values, while the gray matter/white matter separation yielded the expected contrast differentiation. The OEF was calculated with a view to an initial application with clinical relevance, producing results comparable to those in the literature and with good sensitivity in breath-hold experiments.
GE-SE EPIK provides increased resolution and more echoes, including two SEs, than comparable sequences. Moreover, GE-SE EPIK achieves this within an acquisition time of 57 s for 20 slices (matrix size = 128×128; FOV = 24 cm) and with a reasonably short TE for the final echo (114 ms). The sequence can dynamically track OEF changes in a breath-hold experiment.</description><identifier>ISSN: 0740-3194</identifier><identifier>EISSN: 1522-2594</identifier><identifier>DOI: 10.1002/mrm.29305</identifier><identifier>PMID: 35657054</identifier><language>eng</language><publisher>United States</publisher><ispartof>Magnetic resonance in medicine, 2022-10, Vol.88 (4), p.1608-1623</ispartof><rights>2022 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c974-3dea669527337b12a872e7ad38a3ff0991019bacb0b14641719e826114db40c33</citedby><cites>FETCH-LOGICAL-c974-3dea669527337b12a872e7ad38a3ff0991019bacb0b14641719e826114db40c33</cites><orcidid>0000-0001-7398-1899 ; 0000-0002-8365-6931 ; 0000-0002-8151-6169</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35657054$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Küppers, Fabian</creatorcontrib><creatorcontrib>Yun, Seong Dae</creatorcontrib><creatorcontrib>Shah, N Jon</creatorcontrib><title>Development of a novel 10-echo multi-contrast sequence based on EPIK to deliver simultaneous quantification of T 2 and T 2 with application to oxygen extraction fraction</title><title>Magnetic resonance in medicine</title><addtitle>Magn Reson Med</addtitle><description>The simultaneous quantification of T
and T
* maps based on fast sequences for combined GE and SE acquisition has rekindled research and clinical interest by offering a wide range of attractive applications, e.g., dynamic tracking of oxygen extraction fraction (OEF). However, previously published methods based on EPI-readouts have been hindered by resolution and the number of acquired echoes.
This work presents a novel 10-echo GE-SE EPIK (EPI with keyhole) sequence for the rapid quantification of T
'. T
/T
* maps from the GE-SE EPIK sequence were validated using three phantoms and 15 volunteers at 3T. The incorporation of a sliding window approach, combined with the full sampling of the k-space center inherent to EPIK, enables a high effective temporal resolution. That is, for an eight-slice breath-hold experiment, a temporal sampling rate of eight reconstructed slices per 1.1 s.
In comparison with repeated single-echo SE, multi-echo GE, and spectroscopy methods, the GE-SE EPIK sequence shows good agreement in quantifying T
/T
* values, while the gray matter/white matter separation yielded the expected contrast differentiation. The OEF was calculated with a view to an initial application with clinical relevance, producing results comparable to those in the literature and with good sensitivity in breath-hold experiments.
GE-SE EPIK provides increased resolution and more echoes, including two SEs, than comparable sequences. Moreover, GE-SE EPIK achieves this within an acquisition time of 57 s for 20 slices (matrix size = 128×128; FOV = 24 cm) and with a reasonably short TE for the final echo (114 ms). The sequence can dynamically track OEF changes in a breath-hold experiment.</description><issn>0740-3194</issn><issn>1522-2594</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNo9UMtOwzAQtBCIlsKBH0B75ZDiV5LmiEqBikpw6D1ynA0NSuw0Tkr7Sfwl7gNOs5qdndUMIbeMjhml_KFu6zFPBA3PyJCFnAc8TOQ5GdJY0kCwRA7IlXNflNIkieUlGYgwCmMayiH5ecINVrap0XRgC1BgrCeA0QD1ykLdV10ZaGu6VrkOHK57NBohUw5zsAZmH_M36CzkWJUbbMGV-xNl0PYO1r0yXVmUWnWl13r_JXBQJj_gd9mtQDVN9bf3Nna7-0QDuPX_9IEsTsM1uShU5fDmhCOyfJ4tp6_B4v1lPn1cBNpnC0SOKoqSkMdCxBnjahJzjFUuJkoUhc_PKEsypTOaMRlJFrMEJzxiTOaZpFqIEbk_2urWOtdikTZtWat2lzKa7ttOfdvpoW2vvTtqmz6rMf9X_tUrfgHvunyI</recordid><startdate>202210</startdate><enddate>202210</enddate><creator>Küppers, Fabian</creator><creator>Yun, Seong Dae</creator><creator>Shah, N Jon</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0001-7398-1899</orcidid><orcidid>https://orcid.org/0000-0002-8365-6931</orcidid><orcidid>https://orcid.org/0000-0002-8151-6169</orcidid></search><sort><creationdate>202210</creationdate><title>Development of a novel 10-echo multi-contrast sequence based on EPIK to deliver simultaneous quantification of T 2 and T 2 with application to oxygen extraction fraction</title><author>Küppers, Fabian ; Yun, Seong Dae ; Shah, N Jon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c974-3dea669527337b12a872e7ad38a3ff0991019bacb0b14641719e826114db40c33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Küppers, Fabian</creatorcontrib><creatorcontrib>Yun, Seong Dae</creatorcontrib><creatorcontrib>Shah, N Jon</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Magnetic resonance in medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Küppers, Fabian</au><au>Yun, Seong Dae</au><au>Shah, N Jon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development of a novel 10-echo multi-contrast sequence based on EPIK to deliver simultaneous quantification of T 2 and T 2 with application to oxygen extraction fraction</atitle><jtitle>Magnetic resonance in medicine</jtitle><addtitle>Magn Reson Med</addtitle><date>2022-10</date><risdate>2022</risdate><volume>88</volume><issue>4</issue><spage>1608</spage><epage>1623</epage><pages>1608-1623</pages><issn>0740-3194</issn><eissn>1522-2594</eissn><abstract>The simultaneous quantification of T
and T
* maps based on fast sequences for combined GE and SE acquisition has rekindled research and clinical interest by offering a wide range of attractive applications, e.g., dynamic tracking of oxygen extraction fraction (OEF). However, previously published methods based on EPI-readouts have been hindered by resolution and the number of acquired echoes.
This work presents a novel 10-echo GE-SE EPIK (EPI with keyhole) sequence for the rapid quantification of T
'. T
/T
* maps from the GE-SE EPIK sequence were validated using three phantoms and 15 volunteers at 3T. The incorporation of a sliding window approach, combined with the full sampling of the k-space center inherent to EPIK, enables a high effective temporal resolution. That is, for an eight-slice breath-hold experiment, a temporal sampling rate of eight reconstructed slices per 1.1 s.
In comparison with repeated single-echo SE, multi-echo GE, and spectroscopy methods, the GE-SE EPIK sequence shows good agreement in quantifying T
/T
* values, while the gray matter/white matter separation yielded the expected contrast differentiation. The OEF was calculated with a view to an initial application with clinical relevance, producing results comparable to those in the literature and with good sensitivity in breath-hold experiments.
GE-SE EPIK provides increased resolution and more echoes, including two SEs, than comparable sequences. Moreover, GE-SE EPIK achieves this within an acquisition time of 57 s for 20 slices (matrix size = 128×128; FOV = 24 cm) and with a reasonably short TE for the final echo (114 ms). The sequence can dynamically track OEF changes in a breath-hold experiment.</abstract><cop>United States</cop><pmid>35657054</pmid><doi>10.1002/mrm.29305</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-7398-1899</orcidid><orcidid>https://orcid.org/0000-0002-8365-6931</orcidid><orcidid>https://orcid.org/0000-0002-8151-6169</orcidid></addata></record> |
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title | Development of a novel 10-echo multi-contrast sequence based on EPIK to deliver simultaneous quantification of T 2 and T 2 with application to oxygen extraction fraction |
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