A comprehensive analysis of classification methods in gastrointestinal endoscopy imaging

•Benchmark of computer vision methods for multi-class gastroendoscopy image classification.•Longitudinal analysis for three consecutive years (2017 till 2019) crowd-source Medico challenge initiative.•Comprehensive analysis of methods on same dataset reveal the continuous progress of method developm...

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Veröffentlicht in:Medical image analysis 2021-05, Vol.70, p.102007-102007, Article 102007
Hauptverfasser: Jha, Debesh, Ali, Sharib, Hicks, Steven, Thambawita, Vajira, Borgli, Hanna, Smedsrud, Pia H., de Lange, Thomas, Pogorelov, Konstantin, Wang, Xiaowei, Harzig, Philipp, Tran, Minh-Triet, Meng, Wenhua, Hoang, Trung-Hieu, Dias, Danielle, Ko, Tobey H., Agrawal, Taruna, Ostroukhova, Olga, Khan, Zeshan, Atif Tahir, Muhammad, Liu, Yang, Chang, Yuan, Kirkerød, Mathias, Johansen, Dag, Lux, Mathias, Johansen, Håvard D., Riegler, Michael A., Halvorsen, Pål
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container_title Medical image analysis
container_volume 70
creator Jha, Debesh
Ali, Sharib
Hicks, Steven
Thambawita, Vajira
Borgli, Hanna
Smedsrud, Pia H.
de Lange, Thomas
Pogorelov, Konstantin
Wang, Xiaowei
Harzig, Philipp
Tran, Minh-Triet
Meng, Wenhua
Hoang, Trung-Hieu
Dias, Danielle
Ko, Tobey H.
Agrawal, Taruna
Ostroukhova, Olga
Khan, Zeshan
Atif Tahir, Muhammad
Liu, Yang
Chang, Yuan
Kirkerød, Mathias
Johansen, Dag
Lux, Mathias
Johansen, Håvard D.
Riegler, Michael A.
Halvorsen, Pål
description •Benchmark of computer vision methods for multi-class gastroendoscopy image classification.•Longitudinal analysis for three consecutive years (2017 till 2019) crowd-source Medico challenge initiative.•Comprehensive analysis of methods on same dataset reveal the continuous progress of method development.•Efficiency task, hardware task and report generation tasks show the potential for clinically applicable methods. [Display omitted] Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed rate of such abnormalities during endoscopy is thus a critical bottleneck. Lack of attentiveness due to tiring procedures, and requirement of training are few contributing factors. An automatic GI disease classification system can help reduce such risks by flagging suspicious frames and lesions. GI endoscopy consists of several multi-organ surveillance, therefore, there is need to develop methods that can generalize to various endoscopic findings. In this realm, we present a comprehensive analysis of the Medico GI challenges: Medical Multimedia Task at MediaEval 2017, Medico Multimedia Task at MediaEval 2018, and BioMedia ACM MM Grand Challenge 2019. These challenges are initiative to set-up a benchmark for different computer vision methods applied to the multi-class endoscopic images and promote to build new approaches that could reliably be used in clinics. We report the performance of 21 participating teams over a period of three consecutive years and provide a detailed analysis of the methods used by the participants, highlighting the challenges and shortcomings of the current approaches and dissect their credibility for the use in clinical settings. Our analysis revealed that the participants achieved an improvement on maximum Mathew correlation coefficient (MCC) from 82.68% in 2017 to 93.98% in 2018 and 95.20% in 2019 challenges, and a significant increase in computational speed over consecutive years.
doi_str_mv 10.1016/j.media.2021.102007
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[Display omitted] Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed rate of such abnormalities during endoscopy is thus a critical bottleneck. Lack of attentiveness due to tiring procedures, and requirement of training are few contributing factors. An automatic GI disease classification system can help reduce such risks by flagging suspicious frames and lesions. GI endoscopy consists of several multi-organ surveillance, therefore, there is need to develop methods that can generalize to various endoscopic findings. In this realm, we present a comprehensive analysis of the Medico GI challenges: Medical Multimedia Task at MediaEval 2017, Medico Multimedia Task at MediaEval 2018, and BioMedia ACM MM Grand Challenge 2019. These challenges are initiative to set-up a benchmark for different computer vision methods applied to the multi-class endoscopic images and promote to build new approaches that could reliably be used in clinics. We report the performance of 21 participating teams over a period of three consecutive years and provide a detailed analysis of the methods used by the participants, highlighting the challenges and shortcomings of the current approaches and dissect their credibility for the use in clinical settings. 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[Display omitted] Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed rate of such abnormalities during endoscopy is thus a critical bottleneck. Lack of attentiveness due to tiring procedures, and requirement of training are few contributing factors. An automatic GI disease classification system can help reduce such risks by flagging suspicious frames and lesions. GI endoscopy consists of several multi-organ surveillance, therefore, there is need to develop methods that can generalize to various endoscopic findings. In this realm, we present a comprehensive analysis of the Medico GI challenges: Medical Multimedia Task at MediaEval 2017, Medico Multimedia Task at MediaEval 2018, and BioMedia ACM MM Grand Challenge 2019. These challenges are initiative to set-up a benchmark for different computer vision methods applied to the multi-class endoscopic images and promote to build new approaches that could reliably be used in clinics. We report the performance of 21 participating teams over a period of three consecutive years and provide a detailed analysis of the methods used by the participants, highlighting the challenges and shortcomings of the current approaches and dissect their credibility for the use in clinical settings. 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Ali, Sharib ; Hicks, Steven ; Thambawita, Vajira ; Borgli, Hanna ; Smedsrud, Pia H. ; de Lange, Thomas ; Pogorelov, Konstantin ; Wang, Xiaowei ; Harzig, Philipp ; Tran, Minh-Triet ; Meng, Wenhua ; Hoang, Trung-Hieu ; Dias, Danielle ; Ko, Tobey H. ; Agrawal, Taruna ; Ostroukhova, Olga ; Khan, Zeshan ; Atif Tahir, Muhammad ; Liu, Yang ; Chang, Yuan ; Kirkerød, Mathias ; Johansen, Dag ; Lux, Mathias ; Johansen, Håvard D. ; Riegler, Michael A. ; Halvorsen, Pål</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c456t-c90f4a16e62928afd7ece7717c17705c09b5e7da95b272d1d5f3b24d3b7f81fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Abnormalities</topic><topic>Artificial intelligence</topic><topic>BioMedia 2019 grand challenge</topic><topic>Cancer</topic><topic>Classification</topic><topic>Computer applications</topic><topic>Computer vision</topic><topic>Computer-aided detection and diagnosis</topic><topic>Correlation coefficient</topic><topic>Correlation coefficients</topic><topic>Endoscopy</topic><topic>Gastrointestinal endoscopy challenges</topic><topic>Informasjons- og kommunikasjonsvitenskap: 420</topic><topic>Information and communication science: 420</topic><topic>Matematikk og Naturvitenskap: 400</topic><topic>Mathematics and natural science: 400</topic><topic>Medical imaging</topic><topic>Medico Task 2017</topic><topic>Medico Task 2018</topic><topic>Multimedia</topic><topic>Surveillance</topic><topic>VDP</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jha, Debesh</creatorcontrib><creatorcontrib>Ali, Sharib</creatorcontrib><creatorcontrib>Hicks, Steven</creatorcontrib><creatorcontrib>Thambawita, Vajira</creatorcontrib><creatorcontrib>Borgli, Hanna</creatorcontrib><creatorcontrib>Smedsrud, Pia H.</creatorcontrib><creatorcontrib>de Lange, Thomas</creatorcontrib><creatorcontrib>Pogorelov, Konstantin</creatorcontrib><creatorcontrib>Wang, Xiaowei</creatorcontrib><creatorcontrib>Harzig, Philipp</creatorcontrib><creatorcontrib>Tran, Minh-Triet</creatorcontrib><creatorcontrib>Meng, Wenhua</creatorcontrib><creatorcontrib>Hoang, Trung-Hieu</creatorcontrib><creatorcontrib>Dias, Danielle</creatorcontrib><creatorcontrib>Ko, Tobey H.</creatorcontrib><creatorcontrib>Agrawal, Taruna</creatorcontrib><creatorcontrib>Ostroukhova, Olga</creatorcontrib><creatorcontrib>Khan, Zeshan</creatorcontrib><creatorcontrib>Atif Tahir, Muhammad</creatorcontrib><creatorcontrib>Liu, Yang</creatorcontrib><creatorcontrib>Chang, Yuan</creatorcontrib><creatorcontrib>Kirkerød, Mathias</creatorcontrib><creatorcontrib>Johansen, Dag</creatorcontrib><creatorcontrib>Lux, Mathias</creatorcontrib><creatorcontrib>Johansen, Håvard D.</creatorcontrib><creatorcontrib>Riegler, Michael A.</creatorcontrib><creatorcontrib>Halvorsen, Pål</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health &amp; 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[Display omitted] Gastrointestinal (GI) endoscopy has been an active field of research motivated by the large number of highly lethal GI cancers. Early GI cancer precursors are often missed during the endoscopic surveillance. The high missed rate of such abnormalities during endoscopy is thus a critical bottleneck. Lack of attentiveness due to tiring procedures, and requirement of training are few contributing factors. An automatic GI disease classification system can help reduce such risks by flagging suspicious frames and lesions. GI endoscopy consists of several multi-organ surveillance, therefore, there is need to develop methods that can generalize to various endoscopic findings. In this realm, we present a comprehensive analysis of the Medico GI challenges: Medical Multimedia Task at MediaEval 2017, Medico Multimedia Task at MediaEval 2018, and BioMedia ACM MM Grand Challenge 2019. These challenges are initiative to set-up a benchmark for different computer vision methods applied to the multi-class endoscopic images and promote to build new approaches that could reliably be used in clinics. We report the performance of 21 participating teams over a period of three consecutive years and provide a detailed analysis of the methods used by the participants, highlighting the challenges and shortcomings of the current approaches and dissect their credibility for the use in clinical settings. 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1361-8423
language eng
recordid cdi_cristin_nora_10037_23476
source NORA - Norwegian Open Research Archives; Elsevier ScienceDirect Journals
subjects Abnormalities
Artificial intelligence
BioMedia 2019 grand challenge
Cancer
Classification
Computer applications
Computer vision
Computer-aided detection and diagnosis
Correlation coefficient
Correlation coefficients
Endoscopy
Gastrointestinal endoscopy challenges
Informasjons- og kommunikasjonsvitenskap: 420
Information and communication science: 420
Matematikk og Naturvitenskap: 400
Mathematics and natural science: 400
Medical imaging
Medico Task 2017
Medico Task 2018
Multimedia
Surveillance
VDP
title A comprehensive analysis of classification methods in gastrointestinal endoscopy imaging
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