A Microsatellite Genetic Linkage Map of Black Rockfish (Sebastes schlegeli)
Ovoviviparous black rockfish (Sebastes schlegeli) is an important marine fish species for aquaculture and fisheries in China. Genetic information of this species is scarce because of the lack of microsatellite markers. In this study, a large number of microsatellite markers of black rockfish were is...
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Veröffentlicht in: | 中国海洋大学学报:英文版 2014, Vol.13 (6), p.1078-1086 |
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creator | CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi |
description | Ovoviviparous black rockfish (Sebastes schlegeli) is an important marine fish species for aquaculture and fisheries in China. Genetic information of this species is scarce because of the lack of microsatellite markers. In this study, a large number of microsatellite markers of black rockfish were isolated by constructing microsatellite-enriched libraries. Female- and male-specific genetic linkage maps were constructed using 435 microsatellite markers genotyped in a full-sib family of the fish species. The female linkage map contained 140 microsatellite markers, in which 23 linkage groups had a total genetic length of 1334.1 cM and average inter-marker space of 13.3 cM. The male linkage map contained 156 microsatellite markers, in which 25 linkage groups had a total genetic length of 1359.6 cM and average inter-marker distance of 12.4cM. The genome coverage of the female and male linkage maps was 68.6% and 69.3%, respectively. The female-to-male ratio of the recombination rate was approximately 1.07:1 in adjacent microsatellite markers. This paper presents the first genetic linkage map of microsatellites in black rockfish. The collection of poly-morphic markers and sex-specific linkage maps of black rockfish could be useful for further investigations on parental assignment, population genetics, quantitative trait loci mapping, and marker-assisted selection in related breeding programs. |
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Genetic information of this species is scarce because of the lack of microsatellite markers. In this study, a large number of microsatellite markers of black rockfish were isolated by constructing microsatellite-enriched libraries. Female- and male-specific genetic linkage maps were constructed using 435 microsatellite markers genotyped in a full-sib family of the fish species. The female linkage map contained 140 microsatellite markers, in which 23 linkage groups had a total genetic length of 1334.1 cM and average inter-marker space of 13.3 cM. The male linkage map contained 156 microsatellite markers, in which 25 linkage groups had a total genetic length of 1359.6 cM and average inter-marker distance of 12.4cM. The genome coverage of the female and male linkage maps was 68.6% and 69.3%, respectively. The female-to-male ratio of the recombination rate was approximately 1.07:1 in adjacent microsatellite markers. This paper presents the first genetic linkage map of microsatellites in black rockfish. The collection of poly-morphic markers and sex-specific linkage maps of black rockfish could be useful for further investigations on parental assignment, population genetics, quantitative trait loci mapping, and marker-assisted selection in related breeding programs.</description><identifier>ISSN: 1672-5182</identifier><identifier>EISSN: 1993-5021</identifier><language>eng</language><subject>全同胞家系 ; 分子标记辅助选择 ; 基因分型 ; 微卫星标记 ; 石斑鱼 ; 许氏平鲉 ; 遗传连锁图谱 ; 鱼类养殖</subject><ispartof>中国海洋大学学报:英文版, 2014, Vol.13 (6), p.1078-1086</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/87473A/87473A.jpg</thumbnail><link.rule.ids>314,780,784,4024</link.rule.ids></links><search><creatorcontrib>CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi</creatorcontrib><title>A Microsatellite Genetic Linkage Map of Black Rockfish (Sebastes schlegeli)</title><title>中国海洋大学学报:英文版</title><addtitle>Journal of Ocean University of China</addtitle><description>Ovoviviparous black rockfish (Sebastes schlegeli) is an important marine fish species for aquaculture and fisheries in China. Genetic information of this species is scarce because of the lack of microsatellite markers. In this study, a large number of microsatellite markers of black rockfish were isolated by constructing microsatellite-enriched libraries. Female- and male-specific genetic linkage maps were constructed using 435 microsatellite markers genotyped in a full-sib family of the fish species. The female linkage map contained 140 microsatellite markers, in which 23 linkage groups had a total genetic length of 1334.1 cM and average inter-marker space of 13.3 cM. The male linkage map contained 156 microsatellite markers, in which 25 linkage groups had a total genetic length of 1359.6 cM and average inter-marker distance of 12.4cM. The genome coverage of the female and male linkage maps was 68.6% and 69.3%, respectively. The female-to-male ratio of the recombination rate was approximately 1.07:1 in adjacent microsatellite markers. This paper presents the first genetic linkage map of microsatellites in black rockfish. The collection of poly-morphic markers and sex-specific linkage maps of black rockfish could be useful for further investigations on parental assignment, population genetics, quantitative trait loci mapping, and marker-assisted selection in related breeding programs.</description><subject>全同胞家系</subject><subject>分子标记辅助选择</subject><subject>基因分型</subject><subject>微卫星标记</subject><subject>石斑鱼</subject><subject>许氏平鲉</subject><subject>遗传连锁图谱</subject><subject>鱼类养殖</subject><issn>1672-5182</issn><issn>1993-5021</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqNyj0OgjAYgOHGaCL-3OGLOwnQ0MKoxp9BYqLupDYfUKkUKYs30DtxJ66ggwdwep_hHRDHj2Pqhl7gD79mPHBDPwrGZGLtzfNCGjLukOMSEiUbY0WLWqsWYYcVtkrCQVWlyBESUYPJYKWFLOFkZJkpW0Dfvc54FbZFC1YWGnPUqu_eMzLKhLY4_3VKFtvNZb13ZWGq_KGqPK0bdRfNM2WMUh4xzulf0wcZdkC8</recordid><startdate>2014</startdate><enddate>2014</enddate><creator>CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi</creator><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>~WA</scope></search><sort><creationdate>2014</creationdate><title>A Microsatellite Genetic Linkage Map of Black Rockfish (Sebastes schlegeli)</title><author>CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-chongqing_primary_6633786773</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>全同胞家系</topic><topic>分子标记辅助选择</topic><topic>基因分型</topic><topic>微卫星标记</topic><topic>石斑鱼</topic><topic>许氏平鲉</topic><topic>遗传连锁图谱</topic><topic>鱼类养殖</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-自然科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><jtitle>中国海洋大学学报:英文版</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>CHU Guannan JIANG Liming HE Yan YU Haiyang WANG Zhigang JIANG Haibin ZHANG Quanqi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Microsatellite Genetic Linkage Map of Black Rockfish (Sebastes schlegeli)</atitle><jtitle>中国海洋大学学报:英文版</jtitle><addtitle>Journal of Ocean University of China</addtitle><date>2014</date><risdate>2014</risdate><volume>13</volume><issue>6</issue><spage>1078</spage><epage>1086</epage><pages>1078-1086</pages><issn>1672-5182</issn><eissn>1993-5021</eissn><abstract>Ovoviviparous black rockfish (Sebastes schlegeli) is an important marine fish species for aquaculture and fisheries in China. Genetic information of this species is scarce because of the lack of microsatellite markers. In this study, a large number of microsatellite markers of black rockfish were isolated by constructing microsatellite-enriched libraries. Female- and male-specific genetic linkage maps were constructed using 435 microsatellite markers genotyped in a full-sib family of the fish species. The female linkage map contained 140 microsatellite markers, in which 23 linkage groups had a total genetic length of 1334.1 cM and average inter-marker space of 13.3 cM. The male linkage map contained 156 microsatellite markers, in which 25 linkage groups had a total genetic length of 1359.6 cM and average inter-marker distance of 12.4cM. The genome coverage of the female and male linkage maps was 68.6% and 69.3%, respectively. The female-to-male ratio of the recombination rate was approximately 1.07:1 in adjacent microsatellite markers. This paper presents the first genetic linkage map of microsatellites in black rockfish. The collection of poly-morphic markers and sex-specific linkage maps of black rockfish could be useful for further investigations on parental assignment, population genetics, quantitative trait loci mapping, and marker-assisted selection in related breeding programs.</abstract></addata></record> |
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source | SpringerNature Journals; Alma/SFX Local Collection |
subjects | 全同胞家系 分子标记辅助选择 基因分型 微卫星标记 石斑鱼 许氏平鲉 遗传连锁图谱 鱼类养殖 |
title | A Microsatellite Genetic Linkage Map of Black Rockfish (Sebastes schlegeli) |
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