Circumscription of Primula subgenus Auganthus (Primulaceae) based on chloroplast DNA sequences
Recent molecular phylogenetic analyses of Primula have greatly enhanced our understanding of the infrageneric relationships of the genus, but the subgenera Auganthus and Carolinella remain meagerly sampled and poorly understood. In the present study, nucleotide sequence data of three chloroplast DNA...
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description | Recent molecular phylogenetic analyses of Primula have greatly enhanced our understanding of the infrageneric relationships of the genus, but the subgenera Auganthus and Carolinella remain meagerly sampled and poorly understood. In the present study, nucleotide sequence data of three chloroplast DNA regions (matK, rpsl6, and trnL-F) were used to infer phylogenetic relationships of the subgenera Auganthus and Carolinella. Sequence data were acquired and analyzed for 70 species of Primula and its close relatives. The data matrix included 29 species (42%) of subgenus Auganthus and five species (50%) from subgenus Carolinella. Phylogenetic analyses on these data showed that the sampled species of the subgenus Carolinella do not form a monophyletic clade, but are dispersed among the species of the subgenus Auganthus. Therefore, neither subgenus Auganthus nor Carolinella is monophyletic under their current circumscriptions. The distinctive calyptrate capsule that was previously used as a diagnostic criterion for subgenus Carolinella was inferred to have evolved multiple times in Primula based on the phylogeny. Our analysis also confirmed that Cortusa is nested within subgenus Auganthus. We therefore suggest a revised circumscription of subgenus Auganthus to include subgenus Carolinella and the genus Cortusa. Several clades were identified with this broadly defined subgenus Auganthus by the phylogenetic analyses, but their relationships remain incompletely resolved. |
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In the present study, nucleotide sequence data of three chloroplast DNA regions (matK, rpsl6, and trnL-F) were used to infer phylogenetic relationships of the subgenera Auganthus and Carolinella. Sequence data were acquired and analyzed for 70 species of Primula and its close relatives. The data matrix included 29 species (42%) of subgenus Auganthus and five species (50%) from subgenus Carolinella. Phylogenetic analyses on these data showed that the sampled species of the subgenus Carolinella do not form a monophyletic clade, but are dispersed among the species of the subgenus Auganthus. Therefore, neither subgenus Auganthus nor Carolinella is monophyletic under their current circumscriptions. The distinctive calyptrate capsule that was previously used as a diagnostic criterion for subgenus Carolinella was inferred to have evolved multiple times in Primula based on the phylogeny. Our analysis also confirmed that Cortusa is nested within subgenus Auganthus. We therefore suggest a revised circumscription of subgenus Auganthus to include subgenus Carolinella and the genus Cortusa. Several clades were identified with this broadly defined subgenus Auganthus by the phylogenetic analyses, but their relationships remain incompletely resolved.</description><identifier>ISSN: 1674-4918</identifier><identifier>EISSN: 1759-6831</identifier><language>eng</language><subject>DNA序列 ; matK基因 ; 叶绿体DNA ; 序列数据 ; 报春花科 ; 系统发育分析</subject><ispartof>Journal of systematics and evolution : JSE, 2010, Vol.48 (2), p.123-132</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/94666A/94666A.jpg</thumbnail><link.rule.ids>315,782,786,4028</link.rule.ids></links><search><creatorcontrib>Hai-Fei YAN Chong-Hua HE Ching-I PENG Chi-Ming HU Gang HAO</creatorcontrib><title>Circumscription of Primula subgenus Auganthus (Primulaceae) based on chloroplast DNA sequences</title><title>Journal of systematics and evolution : JSE</title><addtitle>Journal of Systematics and Evolution</addtitle><description>Recent molecular phylogenetic analyses of Primula have greatly enhanced our understanding of the infrageneric relationships of the genus, but the subgenera Auganthus and Carolinella remain meagerly sampled and poorly understood. In the present study, nucleotide sequence data of three chloroplast DNA regions (matK, rpsl6, and trnL-F) were used to infer phylogenetic relationships of the subgenera Auganthus and Carolinella. Sequence data were acquired and analyzed for 70 species of Primula and its close relatives. The data matrix included 29 species (42%) of subgenus Auganthus and five species (50%) from subgenus Carolinella. Phylogenetic analyses on these data showed that the sampled species of the subgenus Carolinella do not form a monophyletic clade, but are dispersed among the species of the subgenus Auganthus. Therefore, neither subgenus Auganthus nor Carolinella is monophyletic under their current circumscriptions. The distinctive calyptrate capsule that was previously used as a diagnostic criterion for subgenus Carolinella was inferred to have evolved multiple times in Primula based on the phylogeny. Our analysis also confirmed that Cortusa is nested within subgenus Auganthus. We therefore suggest a revised circumscription of subgenus Auganthus to include subgenus Carolinella and the genus Cortusa. Several clades were identified with this broadly defined subgenus Auganthus by the phylogenetic analyses, but their relationships remain incompletely resolved.</description><subject>DNA序列</subject><subject>matK基因</subject><subject>叶绿体DNA</subject><subject>序列数据</subject><subject>报春花科</subject><subject>系统发育分析</subject><issn>1674-4918</issn><issn>1759-6831</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><recordid>eNqNi0sOgjAURRujid89NM5JSqp8hsRPHBkHzkmpD6iWFvroHnRP7sktyMAFODonOfeOyCyMt2kQJTwcDx7Fm2CThsmUzBHvjEVxEkczUuyUk75B6VTbK2uoLenFqcZrQdEXFRiPNPOVMH092Of9_FUJAj7vFy0Ewo0OR1lr62yrBfZ0f84oQufBSMAlmZRCI6x-XJD18XDdnQJZW1N1ylR5IeSjVBpyznm65Yzxv0ZfsotI9Q</recordid><startdate>2010</startdate><enddate>2010</enddate><creator>Hai-Fei YAN Chong-Hua HE Ching-I PENG Chi-Ming HU Gang HAO</creator><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W94</scope><scope>WU4</scope><scope>~WA</scope></search><sort><creationdate>2010</creationdate><title>Circumscription of Primula subgenus Auganthus (Primulaceae) based on chloroplast DNA sequences</title><author>Hai-Fei YAN Chong-Hua HE Ching-I PENG Chi-Ming HU Gang HAO</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-chongqing_backfile_333953003</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>DNA序列</topic><topic>matK基因</topic><topic>叶绿体DNA</topic><topic>序列数据</topic><topic>报春花科</topic><topic>系统发育分析</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hai-Fei YAN Chong-Hua HE Ching-I PENG Chi-Ming HU Gang HAO</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-自然科学</collection><collection>中文科技期刊数据库-自然科学-生物科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><jtitle>Journal of systematics and evolution : JSE</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hai-Fei YAN Chong-Hua HE Ching-I PENG Chi-Ming HU Gang HAO</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Circumscription of Primula subgenus Auganthus (Primulaceae) based on chloroplast DNA sequences</atitle><jtitle>Journal of systematics and evolution : JSE</jtitle><addtitle>Journal of Systematics and Evolution</addtitle><date>2010</date><risdate>2010</risdate><volume>48</volume><issue>2</issue><spage>123</spage><epage>132</epage><pages>123-132</pages><issn>1674-4918</issn><eissn>1759-6831</eissn><abstract>Recent molecular phylogenetic analyses of Primula have greatly enhanced our understanding of the infrageneric relationships of the genus, but the subgenera Auganthus and Carolinella remain meagerly sampled and poorly understood. In the present study, nucleotide sequence data of three chloroplast DNA regions (matK, rpsl6, and trnL-F) were used to infer phylogenetic relationships of the subgenera Auganthus and Carolinella. Sequence data were acquired and analyzed for 70 species of Primula and its close relatives. The data matrix included 29 species (42%) of subgenus Auganthus and five species (50%) from subgenus Carolinella. Phylogenetic analyses on these data showed that the sampled species of the subgenus Carolinella do not form a monophyletic clade, but are dispersed among the species of the subgenus Auganthus. Therefore, neither subgenus Auganthus nor Carolinella is monophyletic under their current circumscriptions. The distinctive calyptrate capsule that was previously used as a diagnostic criterion for subgenus Carolinella was inferred to have evolved multiple times in Primula based on the phylogeny. Our analysis also confirmed that Cortusa is nested within subgenus Auganthus. We therefore suggest a revised circumscription of subgenus Auganthus to include subgenus Carolinella and the genus Cortusa. Several clades were identified with this broadly defined subgenus Auganthus by the phylogenetic analyses, but their relationships remain incompletely resolved.</abstract></addata></record> |
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subjects | DNA序列 matK基因 叶绿体DNA 序列数据 报春花科 系统发育分析 |
title | Circumscription of Primula subgenus Auganthus (Primulaceae) based on chloroplast DNA sequences |
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