Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.)
The high-affinity K+ (HAK) transporter gene family is the largest family in plant that functions as potassium transporter and is important for various aspects of plant life. In the present study, we identified 27 members of this family in rice genome. The phylogenetic tree divided the land plant HAK...
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Veröffentlicht in: | Journal of genetics and genomics 2009 (3), p.161-172 |
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description | The high-affinity K+ (HAK) transporter gene family is the largest family in plant that functions as potassium transporter and is important for various aspects of plant life. In the present study, we identified 27 members of this family in rice genome. The phylogenetic tree divided the land plant HAK transporter proteins into 6 distinct groups. Although the main characteristic of this family was established before the origin of seed plants, they also showed some differences between the members of non-seed and seed plants. The HAK genes in rice were found to have expanded in lineage-specific manner after the split of monocots and dicots, and both segmental duplication events and tandem duplication events contributed to the expansion of this family. Functional divergence analysis for this family provided statistical evidence for shifted evolutionary rate after gene duplication. Further analysis indicated that both point mutant with positive selection and gene conversion events contributed to the evolution of thi |
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In the present study, we identified 27 members of this family in rice genome. The phylogenetic tree divided the land plant HAK transporter proteins into 6 distinct groups. Although the main characteristic of this family was established before the origin of seed plants, they also showed some differences between the members of non-seed and seed plants. The HAK genes in rice were found to have expanded in lineage-specific manner after the split of monocots and dicots, and both segmental duplication events and tandem duplication events contributed to the expansion of this family. Functional divergence analysis for this family provided statistical evidence for shifted evolutionary rate after gene duplication. Further analysis indicated that both point mutant with positive selection and gene conversion events contributed to the evolution of thi</description><identifier>ISSN: 1673-8527</identifier><language>chi</language><subject>基因传输 ; 水稻 ; 遗传性 ; 钾</subject><ispartof>Journal of genetics and genomics, 2009 (3), p.161-172</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/95085X/95085X.jpg</thumbnail><link.rule.ids>314,776,780,4009</link.rule.ids></links><search><creatorcontrib>Zefeng Yang Qingsong Gao Changsen Sun Wenjuan Li Shiliang Gu Chenwu Xu</creatorcontrib><title>Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.)</title><title>Journal of genetics and genomics</title><addtitle>Journal of Genetics and Genomics</addtitle><description>The high-affinity K+ (HAK) transporter gene family is the largest family in plant that functions as potassium transporter and is important for various aspects of plant life. 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Further analysis indicated that both point mutant with positive selection and gene conversion events contributed to the evolution of thi</description><subject>基因传输</subject><subject>水稻</subject><subject>遗传性</subject><subject>钾</subject><issn>1673-8527</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNqNjEGKAjEQRbNwQJnxDsXslbZ7xthLEQdBxY37poyVtpiYaJJu0BPonbyTV7AFD-Dq8eH91xKdwVBmvdFvKtuiGwJvkiRNslxK2RFx6QypyqAHqp2pIjsLaLegK6ueAw1suSZfklUETsNsPIeDi9iEqj1EjzYcnI_koVEINO7ZnIAteG4O99tl5U9nhICRa4RF_367fokPjSZQ98VP8f03XU9mPbVztjyyLYsNqn_Nhoo0H45-8myQvSU9ANnfTiM</recordid><startdate>2009</startdate><enddate>2009</enddate><creator>Zefeng Yang Qingsong Gao Changsen Sun Wenjuan Li Shiliang Gu Chenwu Xu</creator><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>W95</scope><scope>~WA</scope></search><sort><creationdate>2009</creationdate><title>Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.)</title><author>Zefeng Yang Qingsong Gao Changsen Sun Wenjuan Li Shiliang Gu Chenwu Xu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-chongqing_backfile_296849313</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>chi</language><creationdate>2009</creationdate><topic>基因传输</topic><topic>水稻</topic><topic>遗传性</topic><topic>钾</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zefeng Yang Qingsong Gao Changsen Sun Wenjuan Li Shiliang Gu Chenwu Xu</creatorcontrib><collection>中文科技期刊数据库</collection><collection>中文科技期刊数据库-CALIS站点</collection><collection>中文科技期刊数据库-7.0平台</collection><collection>中文科技期刊数据库-农业科学</collection><collection>中文科技期刊数据库- 镜像站点</collection><jtitle>Journal of genetics and genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zefeng Yang Qingsong Gao Changsen Sun Wenjuan Li Shiliang Gu Chenwu Xu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.)</atitle><jtitle>Journal of genetics and genomics</jtitle><addtitle>Journal of Genetics and Genomics</addtitle><date>2009</date><risdate>2009</risdate><issue>3</issue><spage>161</spage><epage>172</epage><pages>161-172</pages><issn>1673-8527</issn><abstract>The high-affinity K+ (HAK) transporter gene family is the largest family in plant that functions as potassium transporter and is important for various aspects of plant life. In the present study, we identified 27 members of this family in rice genome. The phylogenetic tree divided the land plant HAK transporter proteins into 6 distinct groups. Although the main characteristic of this family was established before the origin of seed plants, they also showed some differences between the members of non-seed and seed plants. The HAK genes in rice were found to have expanded in lineage-specific manner after the split of monocots and dicots, and both segmental duplication events and tandem duplication events contributed to the expansion of this family. Functional divergence analysis for this family provided statistical evidence for shifted evolutionary rate after gene duplication. Further analysis indicated that both point mutant with positive selection and gene conversion events contributed to the evolution of thi</abstract></addata></record> |
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source | Elsevier ScienceDirect Journals; Alma/SFX Local Collection |
subjects | 基因传输 水稻 遗传性 钾 |
title | Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.) |
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