TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets

Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that c...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Biguri, Ander, Sadakane, Tomoyuki, Lindroos, Reuben, Liu, Yi, Landman, Malena Sabaté, Du, Yi, Lohvithee, Manasavee, Kaser, Stefanie, Hatamikia, Sepideh, Bryll, Robert, Valat, Emilien, Wonglee, Sarinrat, Blumensath, Thomas, Schönlieb, Carola-Bibiane
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext bestellen
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title
container_volume
creator Biguri, Ander
Sadakane, Tomoyuki
Lindroos, Reuben
Liu, Yi
Landman, Malena Sabaté
Du, Yi
Lohvithee, Manasavee
Kaser, Stefanie
Hatamikia, Sepideh
Bryll, Robert
Valat, Emilien
Wonglee, Sarinrat
Blumensath, Thomas
Schönlieb, Carola-Bibiane
description Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.
doi_str_mv 10.48550/arxiv.2412.10129
format Article
fullrecord <record><control><sourceid>arxiv_GOX</sourceid><recordid>TN_cdi_arxiv_primary_2412_10129</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2412_10129</sourcerecordid><originalsourceid>FETCH-arxiv_primary_2412_101293</originalsourceid><addsrcrecordid>eNqFzrsOgkAQheFtLIz6AFbOC4hcE7U1eGkNPRmXWd0ILNkdCLy9SOytTvGd4hdiHfhevE8Sf4e2150XxkHoBX4QHubind0u9xS66AipUlpqqhmwLoDQDcAGWkegmSyy7gikqZqWqRilMk-LzUtLsCRN7di2krWpRzLlw_SgjB0JSyiQ0RG7pZgpLB2tfrsQm3Oana7bKStvrK7QDvk3L5_yov-PD3AhRrk</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</title><source>arXiv.org</source><creator>Biguri, Ander ; Sadakane, Tomoyuki ; Lindroos, Reuben ; Liu, Yi ; Landman, Malena Sabaté ; Du, Yi ; Lohvithee, Manasavee ; Kaser, Stefanie ; Hatamikia, Sepideh ; Bryll, Robert ; Valat, Emilien ; Wonglee, Sarinrat ; Blumensath, Thomas ; Schönlieb, Carola-Bibiane</creator><creatorcontrib>Biguri, Ander ; Sadakane, Tomoyuki ; Lindroos, Reuben ; Liu, Yi ; Landman, Malena Sabaté ; Du, Yi ; Lohvithee, Manasavee ; Kaser, Stefanie ; Hatamikia, Sepideh ; Bryll, Robert ; Valat, Emilien ; Wonglee, Sarinrat ; Blumensath, Thomas ; Schönlieb, Carola-Bibiane</creatorcontrib><description>Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.</description><identifier>DOI: 10.48550/arxiv.2412.10129</identifier><language>eng</language><subject>Computer Science - Mathematical Software ; Mathematics - Optimization and Control ; Physics - Medical Physics</subject><creationdate>2024-12</creationdate><rights>http://creativecommons.org/licenses/by/4.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,881</link.rule.ids><linktorsrc>$$Uhttps://arxiv.org/abs/2412.10129$$EView_record_in_Cornell_University$$FView_record_in_$$GCornell_University$$Hfree_for_read</linktorsrc><backlink>$$Uhttps://doi.org/10.48550/arXiv.2412.10129$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Biguri, Ander</creatorcontrib><creatorcontrib>Sadakane, Tomoyuki</creatorcontrib><creatorcontrib>Lindroos, Reuben</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Landman, Malena Sabaté</creatorcontrib><creatorcontrib>Du, Yi</creatorcontrib><creatorcontrib>Lohvithee, Manasavee</creatorcontrib><creatorcontrib>Kaser, Stefanie</creatorcontrib><creatorcontrib>Hatamikia, Sepideh</creatorcontrib><creatorcontrib>Bryll, Robert</creatorcontrib><creatorcontrib>Valat, Emilien</creatorcontrib><creatorcontrib>Wonglee, Sarinrat</creatorcontrib><creatorcontrib>Blumensath, Thomas</creatorcontrib><creatorcontrib>Schönlieb, Carola-Bibiane</creatorcontrib><title>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</title><description>Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.</description><subject>Computer Science - Mathematical Software</subject><subject>Mathematics - Optimization and Control</subject><subject>Physics - Medical Physics</subject><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>GOX</sourceid><recordid>eNqFzrsOgkAQheFtLIz6AFbOC4hcE7U1eGkNPRmXWd0ILNkdCLy9SOytTvGd4hdiHfhevE8Sf4e2150XxkHoBX4QHubind0u9xS66AipUlpqqhmwLoDQDcAGWkegmSyy7gikqZqWqRilMk-LzUtLsCRN7di2krWpRzLlw_SgjB0JSyiQ0RG7pZgpLB2tfrsQm3Oana7bKStvrK7QDvk3L5_yov-PD3AhRrk</recordid><startdate>20241213</startdate><enddate>20241213</enddate><creator>Biguri, Ander</creator><creator>Sadakane, Tomoyuki</creator><creator>Lindroos, Reuben</creator><creator>Liu, Yi</creator><creator>Landman, Malena Sabaté</creator><creator>Du, Yi</creator><creator>Lohvithee, Manasavee</creator><creator>Kaser, Stefanie</creator><creator>Hatamikia, Sepideh</creator><creator>Bryll, Robert</creator><creator>Valat, Emilien</creator><creator>Wonglee, Sarinrat</creator><creator>Blumensath, Thomas</creator><creator>Schönlieb, Carola-Bibiane</creator><scope>AKY</scope><scope>AKZ</scope><scope>GOX</scope></search><sort><creationdate>20241213</creationdate><title>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</title><author>Biguri, Ander ; Sadakane, Tomoyuki ; Lindroos, Reuben ; Liu, Yi ; Landman, Malena Sabaté ; Du, Yi ; Lohvithee, Manasavee ; Kaser, Stefanie ; Hatamikia, Sepideh ; Bryll, Robert ; Valat, Emilien ; Wonglee, Sarinrat ; Blumensath, Thomas ; Schönlieb, Carola-Bibiane</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-arxiv_primary_2412_101293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Computer Science - Mathematical Software</topic><topic>Mathematics - Optimization and Control</topic><topic>Physics - Medical Physics</topic><toplevel>online_resources</toplevel><creatorcontrib>Biguri, Ander</creatorcontrib><creatorcontrib>Sadakane, Tomoyuki</creatorcontrib><creatorcontrib>Lindroos, Reuben</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Landman, Malena Sabaté</creatorcontrib><creatorcontrib>Du, Yi</creatorcontrib><creatorcontrib>Lohvithee, Manasavee</creatorcontrib><creatorcontrib>Kaser, Stefanie</creatorcontrib><creatorcontrib>Hatamikia, Sepideh</creatorcontrib><creatorcontrib>Bryll, Robert</creatorcontrib><creatorcontrib>Valat, Emilien</creatorcontrib><creatorcontrib>Wonglee, Sarinrat</creatorcontrib><creatorcontrib>Blumensath, Thomas</creatorcontrib><creatorcontrib>Schönlieb, Carola-Bibiane</creatorcontrib><collection>arXiv Computer Science</collection><collection>arXiv Mathematics</collection><collection>arXiv.org</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Biguri, Ander</au><au>Sadakane, Tomoyuki</au><au>Lindroos, Reuben</au><au>Liu, Yi</au><au>Landman, Malena Sabaté</au><au>Du, Yi</au><au>Lohvithee, Manasavee</au><au>Kaser, Stefanie</au><au>Hatamikia, Sepideh</au><au>Bryll, Robert</au><au>Valat, Emilien</au><au>Wonglee, Sarinrat</au><au>Blumensath, Thomas</au><au>Schönlieb, Carola-Bibiane</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</atitle><date>2024-12-13</date><risdate>2024</risdate><abstract>Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that can be applied in the context of CT. The Tomographic Iterative GPU-based Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the gap between mathematics and high performance computing for real CT data, providing user-friendly open-source software tools for image reconstruction. However, since its inception, the tools' features and codebase have had over a twenty-fold increase, and are now including greater geometric flexibility, a variety of modern algorithms for image reconstruction, high-performance computing features and support for other CT modalities, like proton CT. The purpose of this work is two-fold: first, it provides a structured overview of the current version of the TIGRE toolbox, providing appropriate descriptions and references, and serving as a comprehensive and peer-reviewed guide for the user; second, it is an opportunity to illustrate the performance of several of the available solvers showcasing real CT acquisitions, which are typically not be openly available to algorithm developers.</abstract><doi>10.48550/arxiv.2412.10129</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier DOI: 10.48550/arxiv.2412.10129
ispartof
issn
language eng
recordid cdi_arxiv_primary_2412_10129
source arXiv.org
subjects Computer Science - Mathematical Software
Mathematics - Optimization and Control
Physics - Medical Physics
title TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-01T22%3A11%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-arxiv_GOX&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=TIGRE%20v3:%20Efficient%20and%20easy%20to%20use%20iterative%20computed%20tomographic%20reconstruction%20toolbox%20for%20real%20datasets&rft.au=Biguri,%20Ander&rft.date=2024-12-13&rft_id=info:doi/10.48550/arxiv.2412.10129&rft_dat=%3Carxiv_GOX%3E2412_10129%3C/arxiv_GOX%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true