TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets
Computed Tomography (CT) has been widely adopted in medicine and it is increasingly being used in scientific and industrial applications. Parallelly, research in different mathematical areas concerning discrete inverse problems has led to the development of new sophisticated numerical solvers that c...
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creator | Biguri, Ander Sadakane, Tomoyuki Lindroos, Reuben Liu, Yi Landman, Malena Sabaté Du, Yi Lohvithee, Manasavee Kaser, Stefanie Hatamikia, Sepideh Bryll, Robert Valat, Emilien Wonglee, Sarinrat Blumensath, Thomas Schönlieb, Carola-Bibiane |
description | Computed Tomography (CT) has been widely adopted in medicine and it is
increasingly being used in scientific and industrial applications. Parallelly,
research in different mathematical areas concerning discrete inverse problems
has led to the development of new sophisticated numerical solvers that can be
applied in the context of CT. The Tomographic Iterative GPU-based
Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the
gap between mathematics and high performance computing for real CT data,
providing user-friendly open-source software tools for image reconstruction.
However, since its inception, the tools' features and codebase have had over a
twenty-fold increase, and are now including greater geometric flexibility, a
variety of modern algorithms for image reconstruction, high-performance
computing features and support for other CT modalities, like proton CT. The
purpose of this work is two-fold: first, it provides a structured overview of
the current version of the TIGRE toolbox, providing appropriate descriptions
and references, and serving as a comprehensive and peer-reviewed guide for the
user; second, it is an opportunity to illustrate the performance of several of
the available solvers showcasing real CT acquisitions, which are typically not
be openly available to algorithm developers. |
doi_str_mv | 10.48550/arxiv.2412.10129 |
format | Article |
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increasingly being used in scientific and industrial applications. Parallelly,
research in different mathematical areas concerning discrete inverse problems
has led to the development of new sophisticated numerical solvers that can be
applied in the context of CT. The Tomographic Iterative GPU-based
Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the
gap between mathematics and high performance computing for real CT data,
providing user-friendly open-source software tools for image reconstruction.
However, since its inception, the tools' features and codebase have had over a
twenty-fold increase, and are now including greater geometric flexibility, a
variety of modern algorithms for image reconstruction, high-performance
computing features and support for other CT modalities, like proton CT. The
purpose of this work is two-fold: first, it provides a structured overview of
the current version of the TIGRE toolbox, providing appropriate descriptions
and references, and serving as a comprehensive and peer-reviewed guide for the
user; second, it is an opportunity to illustrate the performance of several of
the available solvers showcasing real CT acquisitions, which are typically not
be openly available to algorithm developers.</description><identifier>DOI: 10.48550/arxiv.2412.10129</identifier><language>eng</language><subject>Computer Science - Mathematical Software ; Mathematics - Optimization and Control ; Physics - Medical Physics</subject><creationdate>2024-12</creationdate><rights>http://creativecommons.org/licenses/by/4.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,881</link.rule.ids><linktorsrc>$$Uhttps://arxiv.org/abs/2412.10129$$EView_record_in_Cornell_University$$FView_record_in_$$GCornell_University$$Hfree_for_read</linktorsrc><backlink>$$Uhttps://doi.org/10.48550/arXiv.2412.10129$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Biguri, Ander</creatorcontrib><creatorcontrib>Sadakane, Tomoyuki</creatorcontrib><creatorcontrib>Lindroos, Reuben</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Landman, Malena Sabaté</creatorcontrib><creatorcontrib>Du, Yi</creatorcontrib><creatorcontrib>Lohvithee, Manasavee</creatorcontrib><creatorcontrib>Kaser, Stefanie</creatorcontrib><creatorcontrib>Hatamikia, Sepideh</creatorcontrib><creatorcontrib>Bryll, Robert</creatorcontrib><creatorcontrib>Valat, Emilien</creatorcontrib><creatorcontrib>Wonglee, Sarinrat</creatorcontrib><creatorcontrib>Blumensath, Thomas</creatorcontrib><creatorcontrib>Schönlieb, Carola-Bibiane</creatorcontrib><title>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</title><description>Computed Tomography (CT) has been widely adopted in medicine and it is
increasingly being used in scientific and industrial applications. Parallelly,
research in different mathematical areas concerning discrete inverse problems
has led to the development of new sophisticated numerical solvers that can be
applied in the context of CT. The Tomographic Iterative GPU-based
Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the
gap between mathematics and high performance computing for real CT data,
providing user-friendly open-source software tools for image reconstruction.
However, since its inception, the tools' features and codebase have had over a
twenty-fold increase, and are now including greater geometric flexibility, a
variety of modern algorithms for image reconstruction, high-performance
computing features and support for other CT modalities, like proton CT. The
purpose of this work is two-fold: first, it provides a structured overview of
the current version of the TIGRE toolbox, providing appropriate descriptions
and references, and serving as a comprehensive and peer-reviewed guide for the
user; second, it is an opportunity to illustrate the performance of several of
the available solvers showcasing real CT acquisitions, which are typically not
be openly available to algorithm developers.</description><subject>Computer Science - Mathematical Software</subject><subject>Mathematics - Optimization and Control</subject><subject>Physics - Medical Physics</subject><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>GOX</sourceid><recordid>eNqFzrsOgkAQheFtLIz6AFbOC4hcE7U1eGkNPRmXWd0ILNkdCLy9SOytTvGd4hdiHfhevE8Sf4e2150XxkHoBX4QHubind0u9xS66AipUlpqqhmwLoDQDcAGWkegmSyy7gikqZqWqRilMk-LzUtLsCRN7di2krWpRzLlw_SgjB0JSyiQ0RG7pZgpLB2tfrsQm3Oana7bKStvrK7QDvk3L5_yov-PD3AhRrk</recordid><startdate>20241213</startdate><enddate>20241213</enddate><creator>Biguri, Ander</creator><creator>Sadakane, Tomoyuki</creator><creator>Lindroos, Reuben</creator><creator>Liu, Yi</creator><creator>Landman, Malena Sabaté</creator><creator>Du, Yi</creator><creator>Lohvithee, Manasavee</creator><creator>Kaser, Stefanie</creator><creator>Hatamikia, Sepideh</creator><creator>Bryll, Robert</creator><creator>Valat, Emilien</creator><creator>Wonglee, Sarinrat</creator><creator>Blumensath, Thomas</creator><creator>Schönlieb, Carola-Bibiane</creator><scope>AKY</scope><scope>AKZ</scope><scope>GOX</scope></search><sort><creationdate>20241213</creationdate><title>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</title><author>Biguri, Ander ; Sadakane, Tomoyuki ; Lindroos, Reuben ; Liu, Yi ; Landman, Malena Sabaté ; Du, Yi ; Lohvithee, Manasavee ; Kaser, Stefanie ; Hatamikia, Sepideh ; Bryll, Robert ; Valat, Emilien ; Wonglee, Sarinrat ; Blumensath, Thomas ; Schönlieb, Carola-Bibiane</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-arxiv_primary_2412_101293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Computer Science - Mathematical Software</topic><topic>Mathematics - Optimization and Control</topic><topic>Physics - Medical Physics</topic><toplevel>online_resources</toplevel><creatorcontrib>Biguri, Ander</creatorcontrib><creatorcontrib>Sadakane, Tomoyuki</creatorcontrib><creatorcontrib>Lindroos, Reuben</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Landman, Malena Sabaté</creatorcontrib><creatorcontrib>Du, Yi</creatorcontrib><creatorcontrib>Lohvithee, Manasavee</creatorcontrib><creatorcontrib>Kaser, Stefanie</creatorcontrib><creatorcontrib>Hatamikia, Sepideh</creatorcontrib><creatorcontrib>Bryll, Robert</creatorcontrib><creatorcontrib>Valat, Emilien</creatorcontrib><creatorcontrib>Wonglee, Sarinrat</creatorcontrib><creatorcontrib>Blumensath, Thomas</creatorcontrib><creatorcontrib>Schönlieb, Carola-Bibiane</creatorcontrib><collection>arXiv Computer Science</collection><collection>arXiv Mathematics</collection><collection>arXiv.org</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Biguri, Ander</au><au>Sadakane, Tomoyuki</au><au>Lindroos, Reuben</au><au>Liu, Yi</au><au>Landman, Malena Sabaté</au><au>Du, Yi</au><au>Lohvithee, Manasavee</au><au>Kaser, Stefanie</au><au>Hatamikia, Sepideh</au><au>Bryll, Robert</au><au>Valat, Emilien</au><au>Wonglee, Sarinrat</au><au>Blumensath, Thomas</au><au>Schönlieb, Carola-Bibiane</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets</atitle><date>2024-12-13</date><risdate>2024</risdate><abstract>Computed Tomography (CT) has been widely adopted in medicine and it is
increasingly being used in scientific and industrial applications. Parallelly,
research in different mathematical areas concerning discrete inverse problems
has led to the development of new sophisticated numerical solvers that can be
applied in the context of CT. The Tomographic Iterative GPU-based
Reconstruction (TIGRE) toolbox was born almost a decade ago precisely in the
gap between mathematics and high performance computing for real CT data,
providing user-friendly open-source software tools for image reconstruction.
However, since its inception, the tools' features and codebase have had over a
twenty-fold increase, and are now including greater geometric flexibility, a
variety of modern algorithms for image reconstruction, high-performance
computing features and support for other CT modalities, like proton CT. The
purpose of this work is two-fold: first, it provides a structured overview of
the current version of the TIGRE toolbox, providing appropriate descriptions
and references, and serving as a comprehensive and peer-reviewed guide for the
user; second, it is an opportunity to illustrate the performance of several of
the available solvers showcasing real CT acquisitions, which are typically not
be openly available to algorithm developers.</abstract><doi>10.48550/arxiv.2412.10129</doi><oa>free_for_read</oa></addata></record> |
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subjects | Computer Science - Mathematical Software Mathematics - Optimization and Control Physics - Medical Physics |
title | TIGRE v3: Efficient and easy to use iterative computed tomographic reconstruction toolbox for real datasets |
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