Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions

Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain the full phase diagram in the temperature-bending rigidity (...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:arXiv.org 2024-09
Hauptverfasser: Arcangeli, Tobia, Škrbić, Tatjana, Azote, Somiealo, Marcato, Davide, Rosa, Angelo, Banavar, Jayanth R, Piazza, Roberto, Maritan, Amos, Giacometti, Achille
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title arXiv.org
container_volume
creator Arcangeli, Tobia
Škrbić, Tatjana
Azote, Somiealo
Marcato, Davide
Rosa, Angelo
Banavar, Jayanth R
Piazza, Roberto
Maritan, Amos
Giacometti, Achille
description Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain the full phase diagram in the temperature-bending rigidity (stiffness) plane and we provide connections with a classical mean field result on a lattice as well as with past results on the same model. At low bending rigidity and upon cooling, we find a second order coil-globule transition, followed by a subsequent first order globule-crystal transition at lower temperatures. The obtained crystals have the shape of a twisted rod whose length increases with the increase of the stiffness of the chain. Above a critical value of the stiffness, we also find a direct first order globule-crystal transition, with the crystal having the form of a twisted toroid. Close to the triple point, we find a region with isoenergetic structures with frequent switching from rods to toroids, with the toroid eventually becoming the only observed stable phase at higher stiffness. The model is then extended to many thermally equilibrated chains in a box and the analogous phase diagram is deduced where the chains are observed to first fold into a globule bundle at low stiffness upon cooling, and then rearrange into a nematic bundle via a nucleation process involving an isotropic-nematic transition. As in the single chain counterpart, above a critical stiffness the chains are observed to undergo a direct transition from a gas of isotropically distributed chains to a nematic bundle as the temperature decreases in agreement with recent suggestions from mean field theory. The consequences of these findings for self-assembly of biopolymers in solutions are discussed.
doi_str_mv 10.48550/arxiv.2405.11287
format Article
fullrecord <record><control><sourceid>proquest_arxiv</sourceid><recordid>TN_cdi_arxiv_primary_2405_11287</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3057514757</sourcerecordid><originalsourceid>FETCH-LOGICAL-a957-69a252f8fb84dc32c6af95b81efabe8ddec2185ede9b0dbf208deb60258879dc3</originalsourceid><addsrcrecordid>eNotj09rAjEUxEOhULF-gJ4a6Hlt8nazyR6L9B8I7cH7kpgXjGQ3NlHRb99Ue5rhMTO8HyEPnM0bJQR71unkj3NomJhzDkrekAnUNa9UA3BHZjlvGWPQShCinpDV90ZnpAY3-ujjIVE9WpoxuErnjIMJZxpdOQzeBTx5E5DuYjgPmDL1Y_ExVTmGI457WvSw93HM9-TW6ZBx9q9Tsnp7XS0-quXX--fiZVnpTsiq7TQIcMoZ1dh1DetWu04YxdFpg8paXANXAi12hlnjgCmLpmUglJJdaUzJ43X2gtzvkh90Ovd_6P0FvSSeroldij8HzPt-WxjH8lNfMyEFb6SQ9S9gAF5x</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3057514757</pqid></control><display><type>article</type><title>Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions</title><source>arXiv.org</source><source>Free E- Journals</source><creator>Arcangeli, Tobia ; Škrbić, Tatjana ; Azote, Somiealo ; Marcato, Davide ; Rosa, Angelo ; Banavar, Jayanth R ; Piazza, Roberto ; Maritan, Amos ; Giacometti, Achille</creator><creatorcontrib>Arcangeli, Tobia ; Škrbić, Tatjana ; Azote, Somiealo ; Marcato, Davide ; Rosa, Angelo ; Banavar, Jayanth R ; Piazza, Roberto ; Maritan, Amos ; Giacometti, Achille</creatorcontrib><description>Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain the full phase diagram in the temperature-bending rigidity (stiffness) plane and we provide connections with a classical mean field result on a lattice as well as with past results on the same model. At low bending rigidity and upon cooling, we find a second order coil-globule transition, followed by a subsequent first order globule-crystal transition at lower temperatures. The obtained crystals have the shape of a twisted rod whose length increases with the increase of the stiffness of the chain. Above a critical value of the stiffness, we also find a direct first order globule-crystal transition, with the crystal having the form of a twisted toroid. Close to the triple point, we find a region with isoenergetic structures with frequent switching from rods to toroids, with the toroid eventually becoming the only observed stable phase at higher stiffness. The model is then extended to many thermally equilibrated chains in a box and the analogous phase diagram is deduced where the chains are observed to first fold into a globule bundle at low stiffness upon cooling, and then rearrange into a nematic bundle via a nucleation process involving an isotropic-nematic transition. As in the single chain counterpart, above a critical stiffness the chains are observed to undergo a direct transition from a gas of isotropically distributed chains to a nematic bundle as the temperature decreases in agreement with recent suggestions from mean field theory. The consequences of these findings for self-assembly of biopolymers in solutions are discussed.</description><identifier>EISSN: 2331-8422</identifier><identifier>DOI: 10.48550/arxiv.2405.11287</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Bending ; Biopolymers ; Cooling ; Crystals ; Mean field theory ; Monte Carlo simulation ; Nucleation ; Phase diagrams ; Physics - Soft Condensed Matter ; Rigidity ; Self-assembly ; Solvents ; Stiffness</subject><ispartof>arXiv.org, 2024-09</ispartof><rights>2024. This work is published under http://arxiv.org/licenses/nonexclusive-distrib/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>http://arxiv.org/licenses/nonexclusive-distrib/1.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,780,881,27902</link.rule.ids><backlink>$$Uhttps://doi.org/10.48550/arXiv.2405.11287$$DView paper in arXiv$$Hfree_for_read</backlink><backlink>$$Uhttps://doi.org/10.1021/acs.macromol.4c01111$$DView published paper (Access to full text may be restricted)$$Hfree_for_read</backlink></links><search><creatorcontrib>Arcangeli, Tobia</creatorcontrib><creatorcontrib>Škrbić, Tatjana</creatorcontrib><creatorcontrib>Azote, Somiealo</creatorcontrib><creatorcontrib>Marcato, Davide</creatorcontrib><creatorcontrib>Rosa, Angelo</creatorcontrib><creatorcontrib>Banavar, Jayanth R</creatorcontrib><creatorcontrib>Piazza, Roberto</creatorcontrib><creatorcontrib>Maritan, Amos</creatorcontrib><creatorcontrib>Giacometti, Achille</creatorcontrib><title>Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions</title><title>arXiv.org</title><description>Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain the full phase diagram in the temperature-bending rigidity (stiffness) plane and we provide connections with a classical mean field result on a lattice as well as with past results on the same model. At low bending rigidity and upon cooling, we find a second order coil-globule transition, followed by a subsequent first order globule-crystal transition at lower temperatures. The obtained crystals have the shape of a twisted rod whose length increases with the increase of the stiffness of the chain. Above a critical value of the stiffness, we also find a direct first order globule-crystal transition, with the crystal having the form of a twisted toroid. Close to the triple point, we find a region with isoenergetic structures with frequent switching from rods to toroids, with the toroid eventually becoming the only observed stable phase at higher stiffness. The model is then extended to many thermally equilibrated chains in a box and the analogous phase diagram is deduced where the chains are observed to first fold into a globule bundle at low stiffness upon cooling, and then rearrange into a nematic bundle via a nucleation process involving an isotropic-nematic transition. As in the single chain counterpart, above a critical stiffness the chains are observed to undergo a direct transition from a gas of isotropically distributed chains to a nematic bundle as the temperature decreases in agreement with recent suggestions from mean field theory. The consequences of these findings for self-assembly of biopolymers in solutions are discussed.</description><subject>Bending</subject><subject>Biopolymers</subject><subject>Cooling</subject><subject>Crystals</subject><subject>Mean field theory</subject><subject>Monte Carlo simulation</subject><subject>Nucleation</subject><subject>Phase diagrams</subject><subject>Physics - Soft Condensed Matter</subject><subject>Rigidity</subject><subject>Self-assembly</subject><subject>Solvents</subject><subject>Stiffness</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><sourceid>GOX</sourceid><recordid>eNotj09rAjEUxEOhULF-gJ4a6Hlt8nazyR6L9B8I7cH7kpgXjGQ3NlHRb99Ue5rhMTO8HyEPnM0bJQR71unkj3NomJhzDkrekAnUNa9UA3BHZjlvGWPQShCinpDV90ZnpAY3-ujjIVE9WpoxuErnjIMJZxpdOQzeBTx5E5DuYjgPmDL1Y_ExVTmGI457WvSw93HM9-TW6ZBx9q9Tsnp7XS0-quXX--fiZVnpTsiq7TQIcMoZ1dh1DetWu04YxdFpg8paXANXAi12hlnjgCmLpmUglJJdaUzJ43X2gtzvkh90Ovd_6P0FvSSeroldij8HzPt-WxjH8lNfMyEFb6SQ9S9gAF5x</recordid><startdate>20240907</startdate><enddate>20240907</enddate><creator>Arcangeli, Tobia</creator><creator>Škrbić, Tatjana</creator><creator>Azote, Somiealo</creator><creator>Marcato, Davide</creator><creator>Rosa, Angelo</creator><creator>Banavar, Jayanth R</creator><creator>Piazza, Roberto</creator><creator>Maritan, Amos</creator><creator>Giacometti, Achille</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>GOX</scope></search><sort><creationdate>20240907</creationdate><title>Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions</title><author>Arcangeli, Tobia ; Škrbić, Tatjana ; Azote, Somiealo ; Marcato, Davide ; Rosa, Angelo ; Banavar, Jayanth R ; Piazza, Roberto ; Maritan, Amos ; Giacometti, Achille</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a957-69a252f8fb84dc32c6af95b81efabe8ddec2185ede9b0dbf208deb60258879dc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bending</topic><topic>Biopolymers</topic><topic>Cooling</topic><topic>Crystals</topic><topic>Mean field theory</topic><topic>Monte Carlo simulation</topic><topic>Nucleation</topic><topic>Phase diagrams</topic><topic>Physics - Soft Condensed Matter</topic><topic>Rigidity</topic><topic>Self-assembly</topic><topic>Solvents</topic><topic>Stiffness</topic><toplevel>online_resources</toplevel><creatorcontrib>Arcangeli, Tobia</creatorcontrib><creatorcontrib>Škrbić, Tatjana</creatorcontrib><creatorcontrib>Azote, Somiealo</creatorcontrib><creatorcontrib>Marcato, Davide</creatorcontrib><creatorcontrib>Rosa, Angelo</creatorcontrib><creatorcontrib>Banavar, Jayanth R</creatorcontrib><creatorcontrib>Piazza, Roberto</creatorcontrib><creatorcontrib>Maritan, Amos</creatorcontrib><creatorcontrib>Giacometti, Achille</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science &amp; Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>arXiv.org</collection><jtitle>arXiv.org</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arcangeli, Tobia</au><au>Škrbić, Tatjana</au><au>Azote, Somiealo</au><au>Marcato, Davide</au><au>Rosa, Angelo</au><au>Banavar, Jayanth R</au><au>Piazza, Roberto</au><au>Maritan, Amos</au><au>Giacometti, Achille</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions</atitle><jtitle>arXiv.org</jtitle><date>2024-09-07</date><risdate>2024</risdate><eissn>2331-8422</eissn><abstract>Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain the full phase diagram in the temperature-bending rigidity (stiffness) plane and we provide connections with a classical mean field result on a lattice as well as with past results on the same model. At low bending rigidity and upon cooling, we find a second order coil-globule transition, followed by a subsequent first order globule-crystal transition at lower temperatures. The obtained crystals have the shape of a twisted rod whose length increases with the increase of the stiffness of the chain. Above a critical value of the stiffness, we also find a direct first order globule-crystal transition, with the crystal having the form of a twisted toroid. Close to the triple point, we find a region with isoenergetic structures with frequent switching from rods to toroids, with the toroid eventually becoming the only observed stable phase at higher stiffness. The model is then extended to many thermally equilibrated chains in a box and the analogous phase diagram is deduced where the chains are observed to first fold into a globule bundle at low stiffness upon cooling, and then rearrange into a nematic bundle via a nucleation process involving an isotropic-nematic transition. As in the single chain counterpart, above a critical stiffness the chains are observed to undergo a direct transition from a gas of isotropically distributed chains to a nematic bundle as the temperature decreases in agreement with recent suggestions from mean field theory. The consequences of these findings for self-assembly of biopolymers in solutions are discussed.</abstract><cop>Ithaca</cop><pub>Cornell University Library, arXiv.org</pub><doi>10.48550/arxiv.2405.11287</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier EISSN: 2331-8422
ispartof arXiv.org, 2024-09
issn 2331-8422
language eng
recordid cdi_arxiv_primary_2405_11287
source arXiv.org; Free E- Journals
subjects Bending
Biopolymers
Cooling
Crystals
Mean field theory
Monte Carlo simulation
Nucleation
Phase diagrams
Physics - Soft Condensed Matter
Rigidity
Self-assembly
Solvents
Stiffness
title Phase behaviour and self-assembly of semiflexible polymers in poor-solvent solutions
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-28T19%3A12%3A10IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_arxiv&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Phase%20behaviour%20and%20self-assembly%20of%20semiflexible%20polymers%20in%20poor-solvent%20solutions&rft.jtitle=arXiv.org&rft.au=Arcangeli,%20Tobia&rft.date=2024-09-07&rft.eissn=2331-8422&rft_id=info:doi/10.48550/arxiv.2405.11287&rft_dat=%3Cproquest_arxiv%3E3057514757%3C/proquest_arxiv%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3057514757&rft_id=info:pmid/&rfr_iscdi=true