Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction

While enabling accelerated acquisition and improved reconstruction accuracy, current deep MRI reconstruction networks are typically supervised, require fully sampled data, and are limited to Cartesian sampling patterns. These factors limit their practical adoption as fully-sampled MRI is prohibitive...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Zhou, Bo, Schlemper, Jo, Dey, Neel, Salehi, Seyed Sadegh Mohseni, Sheth, Kevin, Liu, Chi, Duncan, James S, Sofka, Michal
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext bestellen
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title
container_volume
creator Zhou, Bo
Schlemper, Jo
Dey, Neel
Salehi, Seyed Sadegh Mohseni
Sheth, Kevin
Liu, Chi
Duncan, James S
Sofka, Michal
description While enabling accelerated acquisition and improved reconstruction accuracy, current deep MRI reconstruction networks are typically supervised, require fully sampled data, and are limited to Cartesian sampling patterns. These factors limit their practical adoption as fully-sampled MRI is prohibitively time-consuming to acquire clinically. Further, non-Cartesian sampling patterns are particularly desirable as they are more amenable to acceleration and show improved motion robustness. To this end, we present a fully self-supervised approach for accelerated non-Cartesian MRI reconstruction which leverages self-supervision in both k-space and image domains. In training, the undersampled data are split into disjoint k-space domain partitions. For the k-space self-supervision, we train a network to reconstruct the input undersampled data from both the disjoint partitions and from itself. For the image-level self-supervision, we enforce appearance consistency obtained from the original undersampled data and the two partitions. Experimental results on our simulated multi-coil non-Cartesian MRI dataset demonstrate that DDSS can generate high-quality reconstruction that approaches the accuracy of the fully supervised reconstruction, outperforming previous baseline methods. Finally, DDSS is shown to scale to highly challenging real-world clinical MRI reconstruction acquired on a portable low-field (0.064 T) MRI scanner with no data available for supervised training while demonstrating improved image quality as compared to traditional reconstruction, as determined by a radiologist study.
doi_str_mv 10.48550/arxiv.2302.09244
format Article
fullrecord <record><control><sourceid>arxiv_GOX</sourceid><recordid>TN_cdi_arxiv_primary_2302_09244</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2302_09244</sourcerecordid><originalsourceid>FETCH-LOGICAL-a674-a0ad47ebb79159ffd10774853373bd72ea5b691859ab74a9e30643d0dfa2aec03</originalsourceid><addsrcrecordid>eNotz01OwzAUBGBvWKDCAVjhCzg4sR3Xyyrlp1IAqS3r6Nl-RpZSp3KSCm5PKaxmMdJoPkLuSl7IpVL8AfJXPBWV4FXBTSXlNflYz9Cz9XCAmOgO-8B28xHzKY7oaYuQU0yfNAyZrpzDHjNM5-JtSKyBPOEYIdHX7YZu0Q1pnPLspjikG3IVoB_x9j8XZP_0uG9eWPv-vGlWLYNaSwYcvNRorTalMiH4kmt9PiqEFtbrCkHZ2pRLZcBqCQYFr6Xw3AeoAB0XC3L_N3txdcccD5C_u19fd_GJH8XPS0w</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction</title><source>arXiv.org</source><creator>Zhou, Bo ; Schlemper, Jo ; Dey, Neel ; Salehi, Seyed Sadegh Mohseni ; Sheth, Kevin ; Liu, Chi ; Duncan, James S ; Sofka, Michal</creator><creatorcontrib>Zhou, Bo ; Schlemper, Jo ; Dey, Neel ; Salehi, Seyed Sadegh Mohseni ; Sheth, Kevin ; Liu, Chi ; Duncan, James S ; Sofka, Michal</creatorcontrib><description>While enabling accelerated acquisition and improved reconstruction accuracy, current deep MRI reconstruction networks are typically supervised, require fully sampled data, and are limited to Cartesian sampling patterns. These factors limit their practical adoption as fully-sampled MRI is prohibitively time-consuming to acquire clinically. Further, non-Cartesian sampling patterns are particularly desirable as they are more amenable to acceleration and show improved motion robustness. To this end, we present a fully self-supervised approach for accelerated non-Cartesian MRI reconstruction which leverages self-supervision in both k-space and image domains. In training, the undersampled data are split into disjoint k-space domain partitions. For the k-space self-supervision, we train a network to reconstruct the input undersampled data from both the disjoint partitions and from itself. For the image-level self-supervision, we enforce appearance consistency obtained from the original undersampled data and the two partitions. Experimental results on our simulated multi-coil non-Cartesian MRI dataset demonstrate that DDSS can generate high-quality reconstruction that approaches the accuracy of the fully supervised reconstruction, outperforming previous baseline methods. Finally, DDSS is shown to scale to highly challenging real-world clinical MRI reconstruction acquired on a portable low-field (0.064 T) MRI scanner with no data available for supervised training while demonstrating improved image quality as compared to traditional reconstruction, as determined by a radiologist study.</description><identifier>DOI: 10.48550/arxiv.2302.09244</identifier><language>eng</language><subject>Computer Science - Computer Vision and Pattern Recognition ; Computer Science - Learning</subject><creationdate>2023-02</creationdate><rights>http://creativecommons.org/licenses/by/4.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,881</link.rule.ids><linktorsrc>$$Uhttps://arxiv.org/abs/2302.09244$$EView_record_in_Cornell_University$$FView_record_in_$$GCornell_University$$Hfree_for_read</linktorsrc><backlink>$$Uhttps://doi.org/10.48550/arXiv.2302.09244$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, Bo</creatorcontrib><creatorcontrib>Schlemper, Jo</creatorcontrib><creatorcontrib>Dey, Neel</creatorcontrib><creatorcontrib>Salehi, Seyed Sadegh Mohseni</creatorcontrib><creatorcontrib>Sheth, Kevin</creatorcontrib><creatorcontrib>Liu, Chi</creatorcontrib><creatorcontrib>Duncan, James S</creatorcontrib><creatorcontrib>Sofka, Michal</creatorcontrib><title>Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction</title><description>While enabling accelerated acquisition and improved reconstruction accuracy, current deep MRI reconstruction networks are typically supervised, require fully sampled data, and are limited to Cartesian sampling patterns. These factors limit their practical adoption as fully-sampled MRI is prohibitively time-consuming to acquire clinically. Further, non-Cartesian sampling patterns are particularly desirable as they are more amenable to acceleration and show improved motion robustness. To this end, we present a fully self-supervised approach for accelerated non-Cartesian MRI reconstruction which leverages self-supervision in both k-space and image domains. In training, the undersampled data are split into disjoint k-space domain partitions. For the k-space self-supervision, we train a network to reconstruct the input undersampled data from both the disjoint partitions and from itself. For the image-level self-supervision, we enforce appearance consistency obtained from the original undersampled data and the two partitions. Experimental results on our simulated multi-coil non-Cartesian MRI dataset demonstrate that DDSS can generate high-quality reconstruction that approaches the accuracy of the fully supervised reconstruction, outperforming previous baseline methods. Finally, DDSS is shown to scale to highly challenging real-world clinical MRI reconstruction acquired on a portable low-field (0.064 T) MRI scanner with no data available for supervised training while demonstrating improved image quality as compared to traditional reconstruction, as determined by a radiologist study.</description><subject>Computer Science - Computer Vision and Pattern Recognition</subject><subject>Computer Science - Learning</subject><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>GOX</sourceid><recordid>eNotz01OwzAUBGBvWKDCAVjhCzg4sR3Xyyrlp1IAqS3r6Nl-RpZSp3KSCm5PKaxmMdJoPkLuSl7IpVL8AfJXPBWV4FXBTSXlNflYz9Cz9XCAmOgO-8B28xHzKY7oaYuQU0yfNAyZrpzDHjNM5-JtSKyBPOEYIdHX7YZu0Q1pnPLspjikG3IVoB_x9j8XZP_0uG9eWPv-vGlWLYNaSwYcvNRorTalMiH4kmt9PiqEFtbrCkHZ2pRLZcBqCQYFr6Xw3AeoAB0XC3L_N3txdcccD5C_u19fd_GJH8XPS0w</recordid><startdate>20230218</startdate><enddate>20230218</enddate><creator>Zhou, Bo</creator><creator>Schlemper, Jo</creator><creator>Dey, Neel</creator><creator>Salehi, Seyed Sadegh Mohseni</creator><creator>Sheth, Kevin</creator><creator>Liu, Chi</creator><creator>Duncan, James S</creator><creator>Sofka, Michal</creator><scope>AKY</scope><scope>GOX</scope></search><sort><creationdate>20230218</creationdate><title>Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction</title><author>Zhou, Bo ; Schlemper, Jo ; Dey, Neel ; Salehi, Seyed Sadegh Mohseni ; Sheth, Kevin ; Liu, Chi ; Duncan, James S ; Sofka, Michal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a674-a0ad47ebb79159ffd10774853373bd72ea5b691859ab74a9e30643d0dfa2aec03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Computer Science - Computer Vision and Pattern Recognition</topic><topic>Computer Science - Learning</topic><toplevel>online_resources</toplevel><creatorcontrib>Zhou, Bo</creatorcontrib><creatorcontrib>Schlemper, Jo</creatorcontrib><creatorcontrib>Dey, Neel</creatorcontrib><creatorcontrib>Salehi, Seyed Sadegh Mohseni</creatorcontrib><creatorcontrib>Sheth, Kevin</creatorcontrib><creatorcontrib>Liu, Chi</creatorcontrib><creatorcontrib>Duncan, James S</creatorcontrib><creatorcontrib>Sofka, Michal</creatorcontrib><collection>arXiv Computer Science</collection><collection>arXiv.org</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Zhou, Bo</au><au>Schlemper, Jo</au><au>Dey, Neel</au><au>Salehi, Seyed Sadegh Mohseni</au><au>Sheth, Kevin</au><au>Liu, Chi</au><au>Duncan, James S</au><au>Sofka, Michal</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction</atitle><date>2023-02-18</date><risdate>2023</risdate><abstract>While enabling accelerated acquisition and improved reconstruction accuracy, current deep MRI reconstruction networks are typically supervised, require fully sampled data, and are limited to Cartesian sampling patterns. These factors limit their practical adoption as fully-sampled MRI is prohibitively time-consuming to acquire clinically. Further, non-Cartesian sampling patterns are particularly desirable as they are more amenable to acceleration and show improved motion robustness. To this end, we present a fully self-supervised approach for accelerated non-Cartesian MRI reconstruction which leverages self-supervision in both k-space and image domains. In training, the undersampled data are split into disjoint k-space domain partitions. For the k-space self-supervision, we train a network to reconstruct the input undersampled data from both the disjoint partitions and from itself. For the image-level self-supervision, we enforce appearance consistency obtained from the original undersampled data and the two partitions. Experimental results on our simulated multi-coil non-Cartesian MRI dataset demonstrate that DDSS can generate high-quality reconstruction that approaches the accuracy of the fully supervised reconstruction, outperforming previous baseline methods. Finally, DDSS is shown to scale to highly challenging real-world clinical MRI reconstruction acquired on a portable low-field (0.064 T) MRI scanner with no data available for supervised training while demonstrating improved image quality as compared to traditional reconstruction, as determined by a radiologist study.</abstract><doi>10.48550/arxiv.2302.09244</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier DOI: 10.48550/arxiv.2302.09244
ispartof
issn
language eng
recordid cdi_arxiv_primary_2302_09244
source arXiv.org
subjects Computer Science - Computer Vision and Pattern Recognition
Computer Science - Learning
title Dual-Domain Self-Supervised Learning for Accelerated Non-Cartesian MRI Reconstruction
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-28T17%3A37%3A20IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-arxiv_GOX&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Dual-Domain%20Self-Supervised%20Learning%20for%20Accelerated%20Non-Cartesian%20MRI%20Reconstruction&rft.au=Zhou,%20Bo&rft.date=2023-02-18&rft_id=info:doi/10.48550/arxiv.2302.09244&rft_dat=%3Carxiv_GOX%3E2302_09244%3C/arxiv_GOX%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true