Multiscale Computational Modeling of Biofilm
We review the computation models for biofilm and bacteria cells, providing perspectives on biofilm's various properties and potential serving as engineering living materials (ELMs), considering the omnipresence of such biological matter. The minireview starts from the molecular regime, bottom-u...
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creator | Zhai, Hanfeng |
description | We review the computation models for biofilm and bacteria cells, providing
perspectives on biofilm's various properties and potential serving as
engineering living materials (ELMs), considering the omnipresence of such
biological matter. The minireview starts from the molecular regime, bottom-up
to the mesoscale, to continuum, with an emphasis on the mesoscale algorithms
such as dissipative particles dynamics (DPD) and individual-based modeling
(IbM). Some representative works are highlighted considering different modeling
methods on each scale. The advantages and limitations of each algorithm for
different scales are elaborated given the existed research works. Specifically,
the potential for IbM, also known as the discrete element method (DEM) is
targeted for its accurate description of both biological and mechanical
properties. |
doi_str_mv | 10.48550/arxiv.2206.03895 |
format | Article |
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perspectives on biofilm's various properties and potential serving as
engineering living materials (ELMs), considering the omnipresence of such
biological matter. The minireview starts from the molecular regime, bottom-up
to the mesoscale, to continuum, with an emphasis on the mesoscale algorithms
such as dissipative particles dynamics (DPD) and individual-based modeling
(IbM). Some representative works are highlighted considering different modeling
methods on each scale. The advantages and limitations of each algorithm for
different scales are elaborated given the existed research works. Specifically,
the potential for IbM, also known as the discrete element method (DEM) is
targeted for its accurate description of both biological and mechanical
properties.</description><identifier>DOI: 10.48550/arxiv.2206.03895</identifier><language>eng</language><subject>Physics - Biological Physics</subject><creationdate>2022-06</creationdate><rights>http://creativecommons.org/licenses/by/4.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,781,886</link.rule.ids><linktorsrc>$$Uhttps://arxiv.org/abs/2206.03895$$EView_record_in_Cornell_University$$FView_record_in_$$GCornell_University$$Hfree_for_read</linktorsrc><backlink>$$Uhttps://doi.org/10.48550/arXiv.2206.03895$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhai, Hanfeng</creatorcontrib><title>Multiscale Computational Modeling of Biofilm</title><description>We review the computation models for biofilm and bacteria cells, providing
perspectives on biofilm's various properties and potential serving as
engineering living materials (ELMs), considering the omnipresence of such
biological matter. The minireview starts from the molecular regime, bottom-up
to the mesoscale, to continuum, with an emphasis on the mesoscale algorithms
such as dissipative particles dynamics (DPD) and individual-based modeling
(IbM). Some representative works are highlighted considering different modeling
methods on each scale. The advantages and limitations of each algorithm for
different scales are elaborated given the existed research works. Specifically,
the potential for IbM, also known as the discrete element method (DEM) is
targeted for its accurate description of both biological and mechanical
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perspectives on biofilm's various properties and potential serving as
engineering living materials (ELMs), considering the omnipresence of such
biological matter. The minireview starts from the molecular regime, bottom-up
to the mesoscale, to continuum, with an emphasis on the mesoscale algorithms
such as dissipative particles dynamics (DPD) and individual-based modeling
(IbM). Some representative works are highlighted considering different modeling
methods on each scale. The advantages and limitations of each algorithm for
different scales are elaborated given the existed research works. Specifically,
the potential for IbM, also known as the discrete element method (DEM) is
targeted for its accurate description of both biological and mechanical
properties.</abstract><doi>10.48550/arxiv.2206.03895</doi><oa>free_for_read</oa></addata></record> |
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title | Multiscale Computational Modeling of Biofilm |
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