Leveraging Clinically Relevant Biometric Constraints To Supervise A Deep Learning Model For The Accurate Caliper Placement To Obtain Sonographic Measurements Of The Fetal Brain
Multiple studies have demonstrated that obtaining standardized fetal brain biometry from mid-trimester ultrasonography (USG) examination is key for the reliable assessment of fetal neurodevelopment and the screening of central nervous system (CNS) anomalies. Obtaining these measurements is highly su...
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creator | Shankar, Hari Narayan, Adithya Jain, Shefali Singh, Divya Vyas, Pooja Hegde, Nivedita Kar, Purbayan Lad, Abhi Thang, Jens Atada, Jagruthi Nguyen, Duy Roopa, P S Vasudeva, Akhila Radhakrishnan, Prathima Devalla, Sripad Krishna |
description | Multiple studies have demonstrated that obtaining standardized fetal brain biometry from mid-trimester ultrasonography (USG) examination is key for the reliable assessment of fetal neurodevelopment and the screening of central nervous system (CNS) anomalies. Obtaining these measurements is highly subjective, expertise-driven, and requires years of training experience, limiting quality prenatal care for all pregnant mothers. In this study, we propose a deep learning (DL) approach to compute 3 key fetal brain biometry from the 2D USG images of the transcerebellar plane (TC) through the accurate and automated caliper placement (2 per biometry) by modeling it as a landmark detection problem. We leveraged clinically relevant biometric constraints (relationship between caliper points) and domain-relevant data augmentation to improve the accuracy of a U-Net DL model (trained/tested on: 596 images, 473 subjects/143 images, 143 subjects). We performed multiple experiments demonstrating the effect of the DL backbone, data augmentation, generalizability and benchmarked against a recent state-of-the-art approach through extensive clinical validation (DL vs. 7 experienced clinicians). For all cases, the mean errors in the placement of the individual caliper points and the computed biometry were comparable to error rates among clinicians. The clinical translation of the proposed framework can assist novice users from low-resource settings in the reliable and standardized assessment of fetal brain sonograms. |
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Obtaining these measurements is highly subjective, expertise-driven, and requires years of training experience, limiting quality prenatal care for all pregnant mothers. In this study, we propose a deep learning (DL) approach to compute 3 key fetal brain biometry from the 2D USG images of the transcerebellar plane (TC) through the accurate and automated caliper placement (2 per biometry) by modeling it as a landmark detection problem. We leveraged clinically relevant biometric constraints (relationship between caliper points) and domain-relevant data augmentation to improve the accuracy of a U-Net DL model (trained/tested on: 596 images, 473 subjects/143 images, 143 subjects). We performed multiple experiments demonstrating the effect of the DL backbone, data augmentation, generalizability and benchmarked against a recent state-of-the-art approach through extensive clinical validation (DL vs. 7 experienced clinicians). For all cases, the mean errors in the placement of the individual caliper points and the computed biometry were comparable to error rates among clinicians. The clinical translation of the proposed framework can assist novice users from low-resource settings in the reliable and standardized assessment of fetal brain sonograms.</description><identifier>EISSN: 2331-8422</identifier><identifier>DOI: 10.48550/arxiv.2203.14482</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Anomalies ; Biometrics ; Brain ; Central nervous system ; Computer Science - Computer Vision and Pattern Recognition ; Constraint modelling ; Data augmentation ; Deep learning ; Placement ; Sonograms</subject><ispartof>arXiv.org, 2022-07</ispartof><rights>2022. This work is published under http://creativecommons.org/publicdomain/zero/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>http://creativecommons.org/publicdomain/zero/1.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,780,881,27902</link.rule.ids><backlink>$$Uhttps://doi.org/10.1109/ISBI52829.2022.9761493$$DView published paper (Access to full text may be restricted)$$Hfree_for_read</backlink><backlink>$$Uhttps://doi.org/10.48550/arXiv.2203.14482$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Shankar, Hari</creatorcontrib><creatorcontrib>Narayan, Adithya</creatorcontrib><creatorcontrib>Jain, Shefali</creatorcontrib><creatorcontrib>Singh, Divya</creatorcontrib><creatorcontrib>Vyas, Pooja</creatorcontrib><creatorcontrib>Hegde, Nivedita</creatorcontrib><creatorcontrib>Kar, Purbayan</creatorcontrib><creatorcontrib>Lad, Abhi</creatorcontrib><creatorcontrib>Thang, Jens</creatorcontrib><creatorcontrib>Atada, Jagruthi</creatorcontrib><creatorcontrib>Nguyen, Duy</creatorcontrib><creatorcontrib>Roopa, P S</creatorcontrib><creatorcontrib>Vasudeva, Akhila</creatorcontrib><creatorcontrib>Radhakrishnan, Prathima</creatorcontrib><creatorcontrib>Devalla, Sripad Krishna</creatorcontrib><title>Leveraging Clinically Relevant Biometric Constraints To Supervise A Deep Learning Model For The Accurate Caliper Placement To Obtain Sonographic Measurements Of The Fetal Brain</title><title>arXiv.org</title><description>Multiple studies have demonstrated that obtaining standardized fetal brain biometry from mid-trimester ultrasonography (USG) examination is key for the reliable assessment of fetal neurodevelopment and the screening of central nervous system (CNS) anomalies. Obtaining these measurements is highly subjective, expertise-driven, and requires years of training experience, limiting quality prenatal care for all pregnant mothers. In this study, we propose a deep learning (DL) approach to compute 3 key fetal brain biometry from the 2D USG images of the transcerebellar plane (TC) through the accurate and automated caliper placement (2 per biometry) by modeling it as a landmark detection problem. We leveraged clinically relevant biometric constraints (relationship between caliper points) and domain-relevant data augmentation to improve the accuracy of a U-Net DL model (trained/tested on: 596 images, 473 subjects/143 images, 143 subjects). We performed multiple experiments demonstrating the effect of the DL backbone, data augmentation, generalizability and benchmarked against a recent state-of-the-art approach through extensive clinical validation (DL vs. 7 experienced clinicians). For all cases, the mean errors in the placement of the individual caliper points and the computed biometry were comparable to error rates among clinicians. The clinical translation of the proposed framework can assist novice users from low-resource settings in the reliable and standardized assessment of fetal brain sonograms.</description><subject>Anomalies</subject><subject>Biometrics</subject><subject>Brain</subject><subject>Central nervous system</subject><subject>Computer Science - Computer Vision and Pattern Recognition</subject><subject>Constraint modelling</subject><subject>Data augmentation</subject><subject>Deep learning</subject><subject>Placement</subject><subject>Sonograms</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><sourceid>GOX</sourceid><recordid>eNotkMFOwkAQhhsTEwnyAJ7cxDO43e6U9ghV1ASCkd6baTuFJUu37rZE3spHtICnOcw33z_5Pe_B5xMZAfBntD_qOBGCBxNfykjceAMRBP44kkLceSPn9pxzEU4FQDDwfpd0JItbVW9ZolWtCtT6xL5I0xHrls2VOVBrVcESU7vWoqpbx1LDNl1D9qgcsRl7IWrYktDWZ83KlKTZwliW7vptUXQWW2IJatWfsE-NBR2od_eWdd72RrYxtdlabHZ9zorQdfZCOLauLpIFtajZ_Jx-791WqB2N_ufQSxevafI-Xq7fPpLZcowgYBzlEIUlxnFelZBz4UeCE0DphzwmwUFiHkoAjMq8nE6By6oUsQQecFEVFRbB0Hu8ai91Zo1VB7Sn7Fxrdqm1J56uRGPNd0euzfams3X_UyZCKSEWPofgD_nyfKg</recordid><startdate>20220731</startdate><enddate>20220731</enddate><creator>Shankar, Hari</creator><creator>Narayan, Adithya</creator><creator>Jain, Shefali</creator><creator>Singh, Divya</creator><creator>Vyas, Pooja</creator><creator>Hegde, Nivedita</creator><creator>Kar, Purbayan</creator><creator>Lad, Abhi</creator><creator>Thang, Jens</creator><creator>Atada, Jagruthi</creator><creator>Nguyen, Duy</creator><creator>Roopa, P S</creator><creator>Vasudeva, Akhila</creator><creator>Radhakrishnan, Prathima</creator><creator>Devalla, Sripad Krishna</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>AKY</scope><scope>GOX</scope></search><sort><creationdate>20220731</creationdate><title>Leveraging Clinically Relevant Biometric Constraints To Supervise A Deep Learning Model For The Accurate Caliper Placement To Obtain Sonographic Measurements Of The Fetal Brain</title><author>Shankar, Hari ; Narayan, Adithya ; Jain, Shefali ; Singh, Divya ; Vyas, Pooja ; Hegde, Nivedita ; Kar, Purbayan ; Lad, Abhi ; Thang, Jens ; Atada, Jagruthi ; Nguyen, Duy ; Roopa, P S ; Vasudeva, Akhila ; Radhakrishnan, Prathima ; Devalla, Sripad Krishna</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a525-8b586da99bfd5b021820e55d1609e2054ab6455a8dbd77504fd29450302fcfac3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Anomalies</topic><topic>Biometrics</topic><topic>Brain</topic><topic>Central nervous system</topic><topic>Computer Science - Computer Vision and Pattern Recognition</topic><topic>Constraint modelling</topic><topic>Data augmentation</topic><topic>Deep learning</topic><topic>Placement</topic><topic>Sonograms</topic><toplevel>online_resources</toplevel><creatorcontrib>Shankar, Hari</creatorcontrib><creatorcontrib>Narayan, Adithya</creatorcontrib><creatorcontrib>Jain, Shefali</creatorcontrib><creatorcontrib>Singh, Divya</creatorcontrib><creatorcontrib>Vyas, Pooja</creatorcontrib><creatorcontrib>Hegde, Nivedita</creatorcontrib><creatorcontrib>Kar, Purbayan</creatorcontrib><creatorcontrib>Lad, Abhi</creatorcontrib><creatorcontrib>Thang, Jens</creatorcontrib><creatorcontrib>Atada, Jagruthi</creatorcontrib><creatorcontrib>Nguyen, Duy</creatorcontrib><creatorcontrib>Roopa, P S</creatorcontrib><creatorcontrib>Vasudeva, Akhila</creatorcontrib><creatorcontrib>Radhakrishnan, Prathima</creatorcontrib><creatorcontrib>Devalla, Sripad Krishna</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>arXiv Computer Science</collection><collection>arXiv.org</collection><jtitle>arXiv.org</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shankar, Hari</au><au>Narayan, Adithya</au><au>Jain, Shefali</au><au>Singh, Divya</au><au>Vyas, Pooja</au><au>Hegde, Nivedita</au><au>Kar, Purbayan</au><au>Lad, Abhi</au><au>Thang, Jens</au><au>Atada, Jagruthi</au><au>Nguyen, Duy</au><au>Roopa, P S</au><au>Vasudeva, Akhila</au><au>Radhakrishnan, Prathima</au><au>Devalla, Sripad Krishna</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Leveraging Clinically Relevant Biometric Constraints To Supervise A Deep Learning Model For The Accurate Caliper Placement To Obtain Sonographic Measurements Of The Fetal Brain</atitle><jtitle>arXiv.org</jtitle><date>2022-07-31</date><risdate>2022</risdate><eissn>2331-8422</eissn><abstract>Multiple studies have demonstrated that obtaining standardized fetal brain biometry from mid-trimester ultrasonography (USG) examination is key for the reliable assessment of fetal neurodevelopment and the screening of central nervous system (CNS) anomalies. 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subjects | Anomalies Biometrics Brain Central nervous system Computer Science - Computer Vision and Pattern Recognition Constraint modelling Data augmentation Deep learning Placement Sonograms |
title | Leveraging Clinically Relevant Biometric Constraints To Supervise A Deep Learning Model For The Accurate Caliper Placement To Obtain Sonographic Measurements Of The Fetal Brain |
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