AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation

Sequence alignments are fundamental to bioinformatics which has resulted in a variety of optimized implementations. Unfortunately, the vast majority of them are hand-tuned and specific to certain architectures and execution models. This not only makes them challenging to understand and extend, but a...

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Veröffentlicht in:	arXiv.org 2020-02
Hauptverfasser:	Müller, André, Schmidt, Bertil, Hildebrandt, Andreas, Membarth, Richard, Leißa, Roland, Kruse, Matthis, Hack, Sebastian
Format:	Artikel
Sprache:	eng
Schlagworte:	Alignment Bioinformatics Computer Science - Distributed, Parallel, and Cluster Computing Computer Science - Performance Gene sequencing Vector processing (computers)
Online-Zugang:	Volltext
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