Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams
This paper presents a new approach for precisely estimating the renal vascular dominant region using a Voronoi diagram. To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dom...
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creator | Wang, Chenglong Roth, Holger R Kitasaka, Takayuki Oda, Masahiro Hayashi, Yuichiro Yoshino, Yasushi Yamamoto, Tokunori Sassa, Naoto Goto, Momokazu Mori, Kensaku |
description | This paper presents a new approach for precisely estimating the renal vascular dominant region using a Voronoi diagram. To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dominant regions. We propose a fully automatic segmentation method that combines a neural network and tensor-based graph-cut methods to precisely extract the kidney and renal arteries. First, we use a convolutional neural network to localize the kidney regions and extract tiny renal arteries with a tensor-based graph-cut method. Then we generate a Voronoi diagram to estimate the renal vascular dominant regions based on the segmented kidney and renal arteries. The accuracy of kidney segmentation in 27 cases with 8-fold cross validation reached a Dice score of 95%. The accuracy of renal artery segmentation in 8 cases obtained a centerline overlap ratio of 80%. Each partition region corresponds to a renal vascular dominant region. The final dominant-region estimation accuracy achieved a Dice coefficient of 80%. A clinical application showed the potential of our proposed estimation approach in a real clinical surgical environment. Further validation using large-scale database is our future work. |
doi_str_mv | 10.48550/arxiv.1908.01543 |
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To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dominant regions. We propose a fully automatic segmentation method that combines a neural network and tensor-based graph-cut methods to precisely extract the kidney and renal arteries. First, we use a convolutional neural network to localize the kidney regions and extract tiny renal arteries with a tensor-based graph-cut method. Then we generate a Voronoi diagram to estimate the renal vascular dominant regions based on the segmented kidney and renal arteries. The accuracy of kidney segmentation in 27 cases with 8-fold cross validation reached a Dice score of 95%. The accuracy of renal artery segmentation in 8 cases obtained a centerline overlap ratio of 80%. Each partition region corresponds to a renal vascular dominant region. The final dominant-region estimation accuracy achieved a Dice coefficient of 80%. A clinical application showed the potential of our proposed estimation approach in a real clinical surgical environment. Further validation using large-scale database is our future work.</description><identifier>EISSN: 2331-8422</identifier><identifier>DOI: 10.48550/arxiv.1908.01543</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Accuracy ; Arteries ; Artificial neural networks ; Computer Science - Computer Vision and Pattern Recognition ; Computer simulation ; Kidneys ; Mathematical analysis ; Neural networks ; Segmentation ; Tensors ; Voronoi graphs</subject><ispartof>arXiv.org, 2019-08</ispartof><rights>2019. This work is published under http://arxiv.org/licenses/nonexclusive-distrib/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>http://arxiv.org/licenses/nonexclusive-distrib/1.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,780,881,27904</link.rule.ids><backlink>$$Uhttps://doi.org/10.1016/j.compmedimag.2019.101642$$DView published paper (Access to full text may be restricted)$$Hfree_for_read</backlink><backlink>$$Uhttps://doi.org/10.48550/arXiv.1908.01543$$DView paper in arXiv$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Chenglong</creatorcontrib><creatorcontrib>Roth, Holger R</creatorcontrib><creatorcontrib>Kitasaka, Takayuki</creatorcontrib><creatorcontrib>Oda, Masahiro</creatorcontrib><creatorcontrib>Hayashi, Yuichiro</creatorcontrib><creatorcontrib>Yoshino, Yasushi</creatorcontrib><creatorcontrib>Yamamoto, Tokunori</creatorcontrib><creatorcontrib>Sassa, Naoto</creatorcontrib><creatorcontrib>Goto, Momokazu</creatorcontrib><creatorcontrib>Mori, Kensaku</creatorcontrib><title>Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams</title><title>arXiv.org</title><description>This paper presents a new approach for precisely estimating the renal vascular dominant region using a Voronoi diagram. To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dominant regions. We propose a fully automatic segmentation method that combines a neural network and tensor-based graph-cut methods to precisely extract the kidney and renal arteries. First, we use a convolutional neural network to localize the kidney regions and extract tiny renal arteries with a tensor-based graph-cut method. Then we generate a Voronoi diagram to estimate the renal vascular dominant regions based on the segmented kidney and renal arteries. The accuracy of kidney segmentation in 27 cases with 8-fold cross validation reached a Dice score of 95%. The accuracy of renal artery segmentation in 8 cases obtained a centerline overlap ratio of 80%. Each partition region corresponds to a renal vascular dominant region. The final dominant-region estimation accuracy achieved a Dice coefficient of 80%. A clinical application showed the potential of our proposed estimation approach in a real clinical surgical environment. Further validation using large-scale database is our future work.</description><subject>Accuracy</subject><subject>Arteries</subject><subject>Artificial neural networks</subject><subject>Computer Science - Computer Vision and Pattern Recognition</subject><subject>Computer simulation</subject><subject>Kidneys</subject><subject>Mathematical analysis</subject><subject>Neural networks</subject><subject>Segmentation</subject><subject>Tensors</subject><subject>Voronoi graphs</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GOX</sourceid><recordid>eNotUMtuwjAQtCpVKqJ8QE-11GtDHT-Cc0SBPiTUVoVyjTaJg0yDTe0Eyif0r2uge9nVaHZGMwjdxGTIpRDkAdyP3g3jlMghiQVnF6hHGYsjySm9QgPv14QQmoyoEKyHft-dKrVXeOpbvYFWW4NtjT-UgQYvwZddAw5P7EYbMG3AV4Hh8afXZoXn2_AATXPA4z04hR-7451Zs7NNd5QKGq-q3Vv35e_xQhlvXZR1LQZT4aV11liNJxpWDjb-Gl3W0Hg1-N99NH-cLrLnaPb29JKNZxEISiNGKlmNgKSUxGlRUBXQhNYpoTSJSS2kSpKiFIrxoqyLomAjzqCUlSIcJCesj27Pqqea8q0Lod0hP9aVn-oKjLszY-vsd6d8m69t50IUnwcPeRrK_gAJz294</recordid><startdate>20190805</startdate><enddate>20190805</enddate><creator>Wang, Chenglong</creator><creator>Roth, Holger R</creator><creator>Kitasaka, Takayuki</creator><creator>Oda, Masahiro</creator><creator>Hayashi, Yuichiro</creator><creator>Yoshino, Yasushi</creator><creator>Yamamoto, Tokunori</creator><creator>Sassa, Naoto</creator><creator>Goto, Momokazu</creator><creator>Mori, Kensaku</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>AKY</scope><scope>GOX</scope></search><sort><creationdate>20190805</creationdate><title>Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams</title><author>Wang, Chenglong ; Roth, Holger R ; Kitasaka, Takayuki ; Oda, Masahiro ; Hayashi, Yuichiro ; Yoshino, Yasushi ; Yamamoto, Tokunori ; Sassa, Naoto ; Goto, Momokazu ; Mori, Kensaku</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a522-30d8d7a092019bb2ea5262f9022610f58e66bc5e34bcfbbb3743ac8de04a8403</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Accuracy</topic><topic>Arteries</topic><topic>Artificial neural networks</topic><topic>Computer Science - Computer Vision and Pattern Recognition</topic><topic>Computer simulation</topic><topic>Kidneys</topic><topic>Mathematical analysis</topic><topic>Neural networks</topic><topic>Segmentation</topic><topic>Tensors</topic><topic>Voronoi graphs</topic><toplevel>online_resources</toplevel><creatorcontrib>Wang, Chenglong</creatorcontrib><creatorcontrib>Roth, Holger R</creatorcontrib><creatorcontrib>Kitasaka, Takayuki</creatorcontrib><creatorcontrib>Oda, Masahiro</creatorcontrib><creatorcontrib>Hayashi, Yuichiro</creatorcontrib><creatorcontrib>Yoshino, Yasushi</creatorcontrib><creatorcontrib>Yamamoto, Tokunori</creatorcontrib><creatorcontrib>Sassa, Naoto</creatorcontrib><creatorcontrib>Goto, Momokazu</creatorcontrib><creatorcontrib>Mori, Kensaku</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>arXiv Computer Science</collection><collection>arXiv.org</collection><jtitle>arXiv.org</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Chenglong</au><au>Roth, Holger R</au><au>Kitasaka, Takayuki</au><au>Oda, Masahiro</au><au>Hayashi, Yuichiro</au><au>Yoshino, Yasushi</au><au>Yamamoto, Tokunori</au><au>Sassa, Naoto</au><au>Goto, Momokazu</au><au>Mori, Kensaku</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams</atitle><jtitle>arXiv.org</jtitle><date>2019-08-05</date><risdate>2019</risdate><eissn>2331-8422</eissn><abstract>This paper presents a new approach for precisely estimating the renal vascular dominant region using a Voronoi diagram. To provide computer-assisted diagnostics for the pre-surgical simulation of partial nephrectomy surgery, we must obtain information on the renal arteries and the renal vascular dominant regions. We propose a fully automatic segmentation method that combines a neural network and tensor-based graph-cut methods to precisely extract the kidney and renal arteries. First, we use a convolutional neural network to localize the kidney regions and extract tiny renal arteries with a tensor-based graph-cut method. Then we generate a Voronoi diagram to estimate the renal vascular dominant regions based on the segmented kidney and renal arteries. The accuracy of kidney segmentation in 27 cases with 8-fold cross validation reached a Dice score of 95%. The accuracy of renal artery segmentation in 8 cases obtained a centerline overlap ratio of 80%. Each partition region corresponds to a renal vascular dominant region. The final dominant-region estimation accuracy achieved a Dice coefficient of 80%. A clinical application showed the potential of our proposed estimation approach in a real clinical surgical environment. Further validation using large-scale database is our future work.</abstract><cop>Ithaca</cop><pub>Cornell University Library, arXiv.org</pub><doi>10.48550/arxiv.1908.01543</doi><oa>free_for_read</oa></addata></record> |
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subjects | Accuracy Arteries Artificial neural networks Computer Science - Computer Vision and Pattern Recognition Computer simulation Kidneys Mathematical analysis Neural networks Segmentation Tensors Voronoi graphs |
title | Precise Estimation of Renal Vascular Dominant Regions Using Spatially Aware Fully Convolutional Networks, Tensor-Cut and Voronoi Diagrams |
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