Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model
Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many publish...
Gespeichert in:
Veröffentlicht in: | arXiv.org 2017-12 |
---|---|
Hauptverfasser: | , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | |
container_start_page | |
container_title | arXiv.org |
container_volume | |
creator | Marquis, Andrew D Arnold, Andrea Caron, Dean Carlson, Brian E Olufsen, Mette S |
description | Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many published methods assume that the underlying model is identifiable (e.g. that a one-to-one mapping exists from the parameter space to the model output). In this study we present a novel methodology that is used here to calibrate a lumped-parameter model to left ventricular pressure and volume time series data sets. Key steps include using (1) literature and available data to determine nominal parameter values; (2) sensitivity analysis and subset selection to determine a set of identifiable parameters; (3) optimization to find a point estimate for identifiable parameters; and (4) frequentist and Bayesian UQ calculations to assess the predictive capability of the model. Our results show that it is possible to determine 5 identifiable model parameters that can be estimated to our experimental data from three rats, and that computed UQ intervals capture the measurement and model error. |
doi_str_mv | 10.48550/arxiv.1710.07989 |
format | Article |
fullrecord | <record><control><sourceid>proquest_arxiv</sourceid><recordid>TN_cdi_arxiv_primary_1710_07989</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2092772737</sourcerecordid><originalsourceid>FETCH-LOGICAL-a527-95177602db6e65a1a666f9383d44c59b4e209fd74b3b3692947b363cf7938c033</originalsourceid><addsrcrecordid>eNotkN1LwzAUxYMgOOb-AJ8M-NyZ5rN5lOHHYOKE-SaU2ySFjNjONB3uvzd2Ph3OvT8O9x6Ebkqy5JUQ5B7ijz8uS5UHROlKX6AZZawsKk7pFVoMw54QQqWiQrAZ-txGMMkbCHhtXZd866HxwacThs7ij864mMB32b-PMO0NJN93uG8x4O0YhmyDwyuI1vdHGMwYIOLX3rpwjS5bCINb_Osc7Z4ed6uXYvP2vF49bAoQVBValEpJQm0jnRRQgpSy1axilnMjdMMdJbq1ijesYVJTzVVWZlqVIUMYm6Pbc-z0en2I_gviqf6roJ4qyMTdmTjE_nt0Q6r3_Ri7fFOds6lSVDHFfgGxDF6_</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2092772737</pqid></control><display><type>article</type><title>Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model</title><source>arXiv.org</source><source>Free E- Journals</source><creator>Marquis, Andrew D ; Arnold, Andrea ; Caron, Dean ; Carlson, Brian E ; Olufsen, Mette S</creator><creatorcontrib>Marquis, Andrew D ; Arnold, Andrea ; Caron, Dean ; Carlson, Brian E ; Olufsen, Mette S</creatorcontrib><description>Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many published methods assume that the underlying model is identifiable (e.g. that a one-to-one mapping exists from the parameter space to the model output). In this study we present a novel methodology that is used here to calibrate a lumped-parameter model to left ventricular pressure and volume time series data sets. Key steps include using (1) literature and available data to determine nominal parameter values; (2) sensitivity analysis and subset selection to determine a set of identifiable parameters; (3) optimization to find a point estimate for identifiable parameters; and (4) frequentist and Bayesian UQ calculations to assess the predictive capability of the model. Our results show that it is possible to determine 5 identifiable model parameters that can be estimated to our experimental data from three rats, and that computed UQ intervals capture the measurement and model error.</description><identifier>EISSN: 2331-8422</identifier><identifier>DOI: 10.48550/arxiv.1710.07989</identifier><language>eng</language><publisher>Ithaca: Cornell University Library, arXiv.org</publisher><subject>Bayesian analysis ; Cardiovascular system ; Error analysis ; Homeostasis ; Identification methods ; Mapping ; Mathematical models ; Model accuracy ; Optimization ; Parameter estimation ; Parameter identification ; Parameter sensitivity ; Predictions ; Quantitative Biology - Quantitative Methods ; Sensitivity analysis ; Uncertainty</subject><ispartof>arXiv.org, 2017-12</ispartof><rights>2017. This work is published under http://arxiv.org/licenses/nonexclusive-distrib/1.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>http://arxiv.org/licenses/nonexclusive-distrib/1.0</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>228,230,776,780,881,27902</link.rule.ids><backlink>$$Uhttps://doi.org/10.48550/arXiv.1710.07989$$DView paper in arXiv$$Hfree_for_read</backlink><backlink>$$Uhttps://doi.org/10.1016/j.mbs.2018.07.001$$DView published paper (Access to full text may be restricted)$$Hfree_for_read</backlink></links><search><creatorcontrib>Marquis, Andrew D</creatorcontrib><creatorcontrib>Arnold, Andrea</creatorcontrib><creatorcontrib>Caron, Dean</creatorcontrib><creatorcontrib>Carlson, Brian E</creatorcontrib><creatorcontrib>Olufsen, Mette S</creatorcontrib><title>Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model</title><title>arXiv.org</title><description>Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many published methods assume that the underlying model is identifiable (e.g. that a one-to-one mapping exists from the parameter space to the model output). In this study we present a novel methodology that is used here to calibrate a lumped-parameter model to left ventricular pressure and volume time series data sets. Key steps include using (1) literature and available data to determine nominal parameter values; (2) sensitivity analysis and subset selection to determine a set of identifiable parameters; (3) optimization to find a point estimate for identifiable parameters; and (4) frequentist and Bayesian UQ calculations to assess the predictive capability of the model. Our results show that it is possible to determine 5 identifiable model parameters that can be estimated to our experimental data from three rats, and that computed UQ intervals capture the measurement and model error.</description><subject>Bayesian analysis</subject><subject>Cardiovascular system</subject><subject>Error analysis</subject><subject>Homeostasis</subject><subject>Identification methods</subject><subject>Mapping</subject><subject>Mathematical models</subject><subject>Model accuracy</subject><subject>Optimization</subject><subject>Parameter estimation</subject><subject>Parameter identification</subject><subject>Parameter sensitivity</subject><subject>Predictions</subject><subject>Quantitative Biology - Quantitative Methods</subject><subject>Sensitivity analysis</subject><subject>Uncertainty</subject><issn>2331-8422</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><sourceid>GOX</sourceid><recordid>eNotkN1LwzAUxYMgOOb-AJ8M-NyZ5rN5lOHHYOKE-SaU2ySFjNjONB3uvzd2Ph3OvT8O9x6Ebkqy5JUQ5B7ijz8uS5UHROlKX6AZZawsKk7pFVoMw54QQqWiQrAZ-txGMMkbCHhtXZd866HxwacThs7ij864mMB32b-PMO0NJN93uG8x4O0YhmyDwyuI1vdHGMwYIOLX3rpwjS5bCINb_Osc7Z4ed6uXYvP2vF49bAoQVBValEpJQm0jnRRQgpSy1axilnMjdMMdJbq1ijesYVJTzVVWZlqVIUMYm6Pbc-z0en2I_gviqf6roJ4qyMTdmTjE_nt0Q6r3_Ri7fFOds6lSVDHFfgGxDF6_</recordid><startdate>20171212</startdate><enddate>20171212</enddate><creator>Marquis, Andrew D</creator><creator>Arnold, Andrea</creator><creator>Caron, Dean</creator><creator>Carlson, Brian E</creator><creator>Olufsen, Mette S</creator><general>Cornell University Library, arXiv.org</general><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>ALC</scope><scope>GOX</scope></search><sort><creationdate>20171212</creationdate><title>Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model</title><author>Marquis, Andrew D ; Arnold, Andrea ; Caron, Dean ; Carlson, Brian E ; Olufsen, Mette S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a527-95177602db6e65a1a666f9383d44c59b4e209fd74b3b3692947b363cf7938c033</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Bayesian analysis</topic><topic>Cardiovascular system</topic><topic>Error analysis</topic><topic>Homeostasis</topic><topic>Identification methods</topic><topic>Mapping</topic><topic>Mathematical models</topic><topic>Model accuracy</topic><topic>Optimization</topic><topic>Parameter estimation</topic><topic>Parameter identification</topic><topic>Parameter sensitivity</topic><topic>Predictions</topic><topic>Quantitative Biology - Quantitative Methods</topic><topic>Sensitivity analysis</topic><topic>Uncertainty</topic><toplevel>online_resources</toplevel><creatorcontrib>Marquis, Andrew D</creatorcontrib><creatorcontrib>Arnold, Andrea</creatorcontrib><creatorcontrib>Caron, Dean</creatorcontrib><creatorcontrib>Carlson, Brian E</creatorcontrib><creatorcontrib>Olufsen, Mette S</creatorcontrib><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>Engineering Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>arXiv Quantitative Biology</collection><collection>arXiv.org</collection><jtitle>arXiv.org</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Marquis, Andrew D</au><au>Arnold, Andrea</au><au>Caron, Dean</au><au>Carlson, Brian E</au><au>Olufsen, Mette S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model</atitle><jtitle>arXiv.org</jtitle><date>2017-12-12</date><risdate>2017</risdate><eissn>2331-8422</eissn><abstract>Mathematical models are essential tools to study how the cardiovascular system maintains homeostasis. The utility of such models is limited by the accuracy of their predictions, which can be determined by uncertainty quantification (UQ). A challenge associated with the use of UQ is that many published methods assume that the underlying model is identifiable (e.g. that a one-to-one mapping exists from the parameter space to the model output). In this study we present a novel methodology that is used here to calibrate a lumped-parameter model to left ventricular pressure and volume time series data sets. Key steps include using (1) literature and available data to determine nominal parameter values; (2) sensitivity analysis and subset selection to determine a set of identifiable parameters; (3) optimization to find a point estimate for identifiable parameters; and (4) frequentist and Bayesian UQ calculations to assess the predictive capability of the model. Our results show that it is possible to determine 5 identifiable model parameters that can be estimated to our experimental data from three rats, and that computed UQ intervals capture the measurement and model error.</abstract><cop>Ithaca</cop><pub>Cornell University Library, arXiv.org</pub><doi>10.48550/arxiv.1710.07989</doi><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | EISSN: 2331-8422 |
ispartof | arXiv.org, 2017-12 |
issn | 2331-8422 |
language | eng |
recordid | cdi_arxiv_primary_1710_07989 |
source | arXiv.org; Free E- Journals |
subjects | Bayesian analysis Cardiovascular system Error analysis Homeostasis Identification methods Mapping Mathematical models Model accuracy Optimization Parameter estimation Parameter identification Parameter sensitivity Predictions Quantitative Biology - Quantitative Methods Sensitivity analysis Uncertainty |
title | Practical Identifiability and Uncertainty Quantification of a Pulsatile Cardiovascular Model |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-01T16%3A59%3A06IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_arxiv&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Practical%20Identifiability%20and%20Uncertainty%20Quantification%20of%20a%20Pulsatile%20Cardiovascular%20Model&rft.jtitle=arXiv.org&rft.au=Marquis,%20Andrew%20D&rft.date=2017-12-12&rft.eissn=2331-8422&rft_id=info:doi/10.48550/arxiv.1710.07989&rft_dat=%3Cproquest_arxiv%3E2092772737%3C/proquest_arxiv%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2092772737&rft_id=info:pmid/&rfr_iscdi=true |