Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit von Schaub, Michael T, Delvenne, Jean-Charles, Yaliraki, Sophia N, Barahona, Mauricio

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Allosteric communication and signal transduction in proteins von Wu, Nan, Barahona, Mauricio, Yaliraki, Sophia N.

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Prediction of Protein Allosteric Signalling Pathways and Functional Residues Through Paths of Optimised Propensity von Wu, Nan, Yaliraki, Sophia N., Barahona, Mauricio

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ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules von Mersmann, Sophia F, Strömich, Léonie, Song, Florian J, Wu, Nan, Vianello, Francesca, Barahona, Mauricio, Yaliraki, Sophia N

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Allosteric Hotspots in the Main Protease of SARS-CoV-2 von Strömich, Léonie, Wu, Nan, Barahona, Mauricio, Yaliraki, Sophia N.

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Allostery and cooperativity in multimeric proteins: bond-to-bond propensities in ATCase von Hodges, Maxwell, Barahona, Mauricio, Yaliraki, Sophia N.

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Interest communities and flow roles in directed networks: the Twitter network of the UK riots von Beguerisse-Díaz, Mariano, Garduño-Hernández, Guillermo, Vangelov, Borislav, Yaliraki, Sophia N., Barahona, Mauricio

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Sensitivity and spectral control of network lasers von Saxena, Dhruv, Arnaudon, Alexis, Cipolato, Oscar, Gaio, Michele, Quentel, Alain, Yaliraki, Sophia, Pisignano, Dario, Camposeo, Andrea, Barahona, Mauricio, Sapienza, Riccardo

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Understanding learner behaviour in online courses with Bayesian modelling and time series characterisation von Peach, Robert L., Greenbury, Sam F., Johnston, Iain G., Yaliraki, Sophia N., Lefevre, David J., Barahona, Mauricio

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From alchemist to AI chemist von Greenaway, Rebecca L., Jelfs, Kim E., Spivey, Alan C., Yaliraki, Sophia N.

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Data-driven unsupervised clustering of online learner behaviour von Peach, Robert L., Yaliraki, Sophia N., Lefevre, David, Barahona, Mauricio

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Prediction of allosteric sites and signaling: Insights from benchmarking datasets von Wu, Nan, Strömich, Léonie, Yaliraki, Sophia N.

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Great cities look small von Sim, Aaron, Yaliraki, Sophia N., Barahona, Mauricio, Stumpf, Michael P. H.

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A computational modeling approach for enhancing self-assembly and biofunctionalisation of collagen biomimetic peptides von Krishnamoorthy, Navaneethakrishnan, Yacoub, Magdi H, Yaliraki, Sophia N

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Investigating the reliability and interpretability of machine learning frameworks for chemical retrosynthesis von Hastedt, Friedrich, Bailey, Rowan M, Hellgardt, Klaus, Yaliraki, Sophia N, del Rio Chanona, Ehecatl Antonio, Zhang, Dongda

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From free text to clusters of content in health records: an unsupervised graph partitioning approach von Altuncu, M. Tarik, Mayer, Erik, Yaliraki, Sophia N., Barahona, Mauricio

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HCGA: Highly comparative graph analysis for network phenotyping von Peach, Robert L., Arnaudon, Alexis, Schmidt, Julia A., Palasciano, Henry A., Bernier, Nathan R., Jelfs, Kim E., Yaliraki, Sophia N., Barahona, Mauricio

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Structure of complex networks: Quantifying edge-to-edge relations by failure-induced flow redistribution von SCHAUB, MICHAEL T., LEHMANN, JÖRG, YALIRAKI, SOPHIA N., BARAHONA, MAURICIO

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The directional contact distance of two ellipsoids: Coarse-grained potentials for anisotropic interactions von Paramonov, Leonid, Yaliraki, Sophia N.

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Proteins across scales through graph partitioning: application to the major peanut allergen Ara h 1 von Zhang, Heng, Salazar, José Domingo, Yaliraki, Sophia N

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