Cancer Systems Biology: Methods and Protocols von Stechow, Louise von

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Benchmarking common quantification strategies for large-scale phosphoproteomics von Hogrebe, Alexander, von Stechow, Louise, Bekker-Jensen, Dorte B., Weinert, Brian T., Kelstrup, Christian D., Olsen, Jesper V.

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Computational Cell Biology: Methods and Protocols von Stechow, Louise von, Delgado, Alberto Santos

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Phospho-Proteomics: Methods and Protocols von Stechow, Louise von

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Profiling Tumor Infiltrating Immune Cells with CIBERSORT von Chen, Binbin, Khodadoust, Michael S., Liu, Chih Long, Newman, Aaron M., Alizadeh, Ash A.

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Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research von Tyanova, Stefka, Cox, Juergen

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Methods for High-throughput Drug Combination Screening and Synergy Scoring von He, Liye, Kulesskiy, Evgeny, Saarela, Jani, Turunen, Laura, Wennerberg, Krister, Aittokallio, Tero, Tang, Jing

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Identification of cisplatin-regulated metabolic pathways in pluripotent stem cells von von Stechow, Louise, Ruiz-Aracama, Ainhoa, van de Water, Bob, Peijnenburg, Ad, Danen, Erik, Lommen, Arjen

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Proteomics Reveals Global Regulation of Protein SUMOylation by ATM and ATR Kinases during Replication Stress von Munk, Stephanie, Sigurðsson, Jón Otti, Xiao, Zhenyu, Batth, Tanveer Singh, Franciosa, Giulia, von Stechow, Louise, Lopez-Contreras, Andres Joaquin, Vertegaal, Alfred Cornelis Otto, Olsen, Jesper Velgaard

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The E3 Ubiquitin Ligase ARIH1 Protects against Genotoxic Stress by Initiating a 4EHP-Mediated mRNA Translation Arrest von von Stechow, Louise, Typas, Dimitris, Carreras Puigvert, Jordi, Oort, Laurens, Siddappa, Ramakrishnaiah, Pines, Alex, Vrieling, Harry, van de Water, Bob, Mullenders, Leon H. F., Danen, Erik H. J.

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Mechanically Coupled Reaction-Diffusion Model to Predict Glioma Growth: Methodological Details von Hormuth, David A., Eldridge, Stephanie L., Weis, Jared A., Miga, Michael I., Yankeelov, Thomas E.

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Global Phosphoproteome Profiling Reveals Unanticipated Networks Responsive to Cisplatin Treatment of Embryonic Stem Cells von Pines, Alex, Kelstrup, Christian D., Vrouwe, Mischa G., Puigvert, Jordi C., Typas, Dimitris, Misovic, Branislav, de Groot, Anton, von Stechow, Louise, van de Water, Bob, Danen, Erik H. J., Vrieling, Harry, Mullenders, Leon H. F., Olsen, Jesper V.

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miRNet—Functional Analysis and Visual Exploration of miRNA–Target Interactions in a Network Context von Fan, Yannan, Xia, Jianguo

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The Use of Titanium Dioxide for Selective Enrichment of Phosphorylated Peptides von Thingholm, Tine E., Larsen, Martin R.

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Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells von Wirbel, Jakob, Cutillas, Pedro, Saez-Rodriguez, Julio

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Enrichment Strategies in Phosphoproteomics von Leitner, Alexander

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Sequential Elution from IMAC (SIMAC): An Efficient Method for Enrichment and Separation of Mono- and Multi-phosphorylated Peptides von Thingholm, Tine E., Larsen, Martin R.

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Simple and Reproducible Sample Preparation for Single-Shot Phosphoproteomics with High Sensitivity von Jersie-Christensen, Rosa R., Sultan, Abida, Olsen, Jesper V.

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Offline High pH Reversed-Phase Peptide Fractionation for Deep Phosphoproteome Coverage von Batth, Tanveer S., Olsen, Jesper V.

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Improving the Phosphoproteome Coverage for Limited Sample Amounts Using TiO2-SIMAC-HILIC (TiSH) Phosphopeptide Enrichment and Fractionation von Engholm-Keller, Kasper, Larsen, Martin R.

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