Human genetics shape the gut microbiome von Goodrich, Julia K, Waters, Jillian L, Poole, Angela C, Sutter, Jessica L, Koren, Omry, Blekhman, Ran, Beaumont, Michelle, Van Treuren, William, Knight, Rob, Bell, Jordana T, Spector, Timothy D, Clark, Andrew G, Ley, Ruth E

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Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut von Seedorf, Henning, Griffin, Nicholas W., Ridaura, Vanessa K., Reyes, Alejandro, Cheng, Jiye, Rey, Federico E., Smith, Michelle I., Simon, Gabriel M., Scheffrahn, Rudolf H., Woebken, Dagmar, Spormann, Alfred M., Van Treuren, William, Ursell, Luke K., Pirrung, Megan, Robbins-Pianka, Adam, Cantarel, Brandi L., Lombard, Vincent, Henrissat, Bernard, Knight, Rob, Gordon, Jeffrey I.

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Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions von Hryckowian, Andrew J., Merrill, Bryan D., Porter, Nathan T., Van Treuren, William, Nelson, Eric J., Garlena, Rebecca A., Russell, Daniel A., Martens, Eric C., Sonnenburg, Justin L.

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Microbial Contribution to the Human Metabolome: Implications for Health and Disease von Van Treuren, William, Dodd, Dylan

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Gut-microbiota-targeted diets modulate human immune status von Wastyk, Hannah C., Fragiadakis, Gabriela K., Perelman, Dalia, Dahan, Dylan, Merrill, Bryan D., Yu, Feiqiao B., Topf, Madeline, Gonzalez, Carlos G., Van Treuren, William, Han, Shuo, Robinson, Jennifer L., Elias, Joshua E., Sonnenburg, Erica D., Gardner, Christopher D., Sonnenburg, Justin L.

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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs von Ng, Katharine Michelle, Aranda-Díaz, Andrés, Tropini, Carolina, Frankel, Matthew Ryan, Van Treuren, William, O’Loughlin, Colleen T., Merrill, Bryan Douglas, Yu, Feiqiao Brian, Pruss, Kali M., Oliveira, Rita Almeida, Higginbottom, Steven Kyle, Neff, Norma F., Fischbach, Michael Andrew, Xavier, Karina Bivar, Sonnenburg, Justin Laine, Huang, Kerwyn Casey

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The Clinical Drug Ebselen Attenuates Inflammation and Promotes Microbiome Recovery in Mice after Antibiotic Treatment for CDI von Garland, Megan, Hryckowian, Andrew J., Tholen, Martina, Oresic Bender, Kristina, Van Treuren, William W., Loscher, Sebastian, Sonnenburg, Justin L., Bogyo, Matthew

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Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid von Pruss, Kali M., Chen, Haoqing, Liu, Yuanyuan, Van Treuren, William, Higginbottom, Steven K., Jarman, John B., Fischer, Curt R., Mak, Justin, Wong, Beverly, Cowan, Tina M., Fischbach, Michael A., Sonnenburg, Justin L., Dodd, Dylan

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Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model von Hryckowian, Andrew J., Van Treuren, William, Smits, Samuel A., Davis, Nicole M., Gardner, Jackson O., Bouley, Donna M., Sonnenburg, Justin L.

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Butyrate Differentiates Permissiveness to Clostridioides difficile Infection and Influences Growth of Diverse C. difficile Isolates von Pensinger, Daniel A, Fisher, Andrea T, Dobrila, Horia A, Van Treuren, William, Gardner, Jackson O, Higginbottom, Steven K, Carter, Matthew M, Schumann, Benjamin, Bertozzi, Carolyn R, Anikst, Victoria, Martin, Cody, Robilotti, Elizabeth V, Chow, Jo May, Buck, Rachael H, Tompkins, Lucy S, Sonnenburg, Justin L, Hryckowian, Andrew J

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Replenishing our defensive microbes von Ursell, Luke K., Treuren, William Van, Metcalf, Jessica L., Pirrung, Meg, Gewirtz, Andrew, Knight, Rob

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Clostridium sporogenes uses reductive Stickland metabolism in the gut to generate ATP and produce circulating metabolites von Liu, Yuanyuan, Chen, Haoqing, Van Treuren, William, Hou, Bi-Huei, Higginbottom, Steven K., Dodd, Dylan

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Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model von Hryckowian, Andrew J., Van Treuren, William, Smits, Samuel A., Davis, Nicole M., Gardner, Jackson O., Bouley, Donna M., Sonnenburg, Justin L.

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A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites von Dodd, Dylan, Spitzer, Matthew H., Van Treuren, William, Merrill, Bryan D., Hryckowian, Andrew J., Higginbottom, Steven K., Le, Anthony, Cowan, Tina M., Nolan, Garry P., Fischbach, Michael A., Sonnenburg, Justin L.

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Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice von Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.

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Links between environment, diet, and the hunter-gatherer microbiome von Fragiadakis, Gabriela K., Smits, Samuel A., Sonnenburg, Erica D., Van Treuren, William, Reid, Gregor, Knight, Rob, Manjurano, Alphaxard, Changalucha, John, Dominguez-Bello, Maria Gloria, Leach, Jeff, Sonnenburg, Justin L.

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Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs von Ng, Katharine Michelle, Aranda-Díaz, Andrés, Tropini, Carolina, Frankel, Matthew Ryan, Van Treuren, William, O’Loughlin, Colleen T., Merrill, Bryan Douglas, Yu, Feiqiao Brian, Pruss, Kali M., Oliveira, Rita Almeida, Higginbottom, Steven Kyle, Neff, Norma F., Fischbach, Michael Andrew, Xavier, Karina Bivar, Sonnenburg, Justin Laine, Huang, Kerwyn Casey

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Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin von Loudon, Andrew H, Venkataraman, Arvind, Van Treuren, William, Woodhams, Douglas C, Parfrey, Laura Wegener, McKenzie, Valerie J, Knight, Rob, Schmidt, Thomas M, Harris, Reid N

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Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization von Pruss, Kali M., Enam, Fatima, Battaglioli, Eric, DeFeo, Mary, Diaz, Oscar R., Higginbottom, Steven K., Fischer, Curt R., Hryckowian, Andrew J., Van Treuren, William, Dodd, Dylan, Kashyap, Purna, Sonnenburg, Justin L.

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Cultured gut microbiota from twins discordant for obesity modulate adiposity and metabolic phenotypes in mice von Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.

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