An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar von Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, De Jesus, Jaqueline Goes, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Van Rompay, Koen K A, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G

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Zika Virus Tissue and Blood Compartmentalization in Acute Infection of Rhesus Macaques von Coffey, Lark L, Pesavento, Patricia A, Keesler, Rebekah I, Singapuri, Anil, Watanabe, Jennifer, Watanabe, Rie, Yee, JoAnn, Bliss-Moreau, Eliza, Cruzen, Christina, Christe, Kari L, Reader, J Rachel, von Morgenland, Wilhelm, Gibbons, Anne M, Allen, A Mark, Linnen, Jeff, Gao, Kui, Delwart, Eric, Simmons, Graham, Stone, Mars, Lanteri, Marion, Bakkour, Sonia, Busch, Michael, Morrison, John, Van Rompay, Koen K A

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Harnessing early life immunity to develop a pediatric HIV vaccine that can protect through adolescence von Goswami, Ria, Berendam, Stella J., Li, Shuk Hang, Nelson, Ashley N., De Paris, Kristina, Van Rompay, Koen K. A., Permar, Sallie R., Fouda, Genevieve G.

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Early treatment with a combination of two potent neutralizing antibodies improves clinical outcomes and reduces virus replication and lung inflammation in SARS-CoV-2 infected macaq... von Van Rompay, Koen K. A., Olstad, Katherine J., Sammak, Rebecca L., Dutra, Joseph, Watanabe, Jennifer K., Usachenko, Jodie L., Immareddy, Ramya, Verma, Anil, Shaan Lakshmanappa, Yashavanth, Schmidt, Brian A., Roh, Jamin W., Elizaldi, Sonny R., Allen, A. Mark, Muecksch, Frauke, Lorenzi, Julio C. C., Lockwood, Sarah, Pollard, Rachel E., Yee, JoAnn L., Nham, Peter B., Ardeshir, Amir, Deere, Jesse D., Patterson, Jean, Dang, Que, Hatziioannou, Theodora, Bieniasz, Paul D., Iyer, Smita S., Hartigan-O'Connor, Dennis J., Nussenzweig, Michel C., Reader, J. Rachel

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Zika virus persistence in the male macaque reproductive tract von Ball, Erin E, Pesavento, Patricia A, Van Rompay, Koen K. A, Keel, M. Kevin, Singapuri, Anil, Gomez-Vazquez, Jose P, Dudley, Dawn M, O'Connor, David H, Breitbach, Meghan E, Maness, Nicholas J, Schouest, Blake, Panganiban, Antonito, Coffey, Lark L

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Simian retrovirus transmission in rhesus macaques von Nham, Peter, Halley, Bryson, Van Rompay, Koen K. A., Roberts, Jeffrey, Yee, JoAnn

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Neuroanatomical abnormalities in a nonhuman primate model of congenital Zika virus infection von Beckman, Danielle, Seelke, Adele M H, Bennett, Jeffrey, Dougherty, Paige, Van Rompay, Koen K A, Keesler, Rebekah, Pesavento, Patricia A, Coffey, Lark L A, Morrison, John H, Bliss-Moreau, Eliza

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Vaccine-Induced, High-Magnitude HIV Env-Specific Antibodies with Fc-Mediated Effector Functions Are Insufficient to Protect Infant Rhesus Macaques against Oral SHIV Infection von Curtis, 2nd, Alan D, Saha, Pooja T, Dennis, Maria, Berendam, Stella J, Ramasubramanian, Pratamesh, Cross, Kaitlyn A, Alam, S Munir, Ferrari, Guido, Kozlowski, Pamela A, Fouda, Genevieve G, Hudgens, Michael G, Van Rompay, Koen K A, Pollara, Justin, Permar, Sallie R, De Paris, Kristina

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Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence von Borucki, Monica K, Collette, Nicole M, Coffey, Lark L, Van Rompay, Koen K A, Hwang, Mona H, Thissen, James B, Allen, Jonathan E, Zemla, Adam T

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Different adjuvanted pediatric HIV envelope vaccines induced distinct plasma antibody responses despite similar B cell receptor repertoires in infant rhesus macaques von Berendam, Stella J., Morgan-Asiedu, Papa K., Mangan, Riley J., Li, Shuk Hang, Heimsath, Holly, Luo, Kan, Curtis, Alan D., Eudailey, Joshua A., Fox, Christopher B., Tomai, Mark A., Phillips, Bonnie, Itell, Hannah L., Kunz, Erika, Hudgens, Michael, Cronin, Kenneth, Wiehe, Kevin, Alam, S. Munir, Van Rompay, Koen K. A., De Paris, Kristina, Permar, Sallie R., Moody, M. Anthony, Fouda, Genevieve G.

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Early post-infection treatment of SARS-CoV-2 infected macaques with human convalescent plasma with high neutralizing activity had no antiviral effects but moderately reduced lung i... von Van Rompay, Koen K A, Olstad, Katherine J, Sammak, Rebecca L, Dutra, Joseph, Watanabe, Jennifer K, Usachenko, Jodie L, Immareddy, Ramya, Roh, Jamin W, Verma, Anil, Shaan Lakshmanappa, Yashavanth, Schmidt, Brian A, Di Germanio, Clara, Rizvi, Nabeela, Liu, Hongwei, Ma, Zhong-Min, Stone, Mars, Simmons, Graham, Dumont, Larry J, Allen, A Mark, Lockwood, Sarah, Pollard, Rachel E, Ramiro de Assis, Rafael, Yee, JoAnn L, Nham, Peter B, Ardeshir, Amir, Deere, Jesse D, Jain, Aarti, Felgner, Philip L, Coffey, Lark L, Iyer, Smita S, Hartigan-O'Connor, Dennis J, Busch, Michael P, Reader, J Rachel

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A virus-like particle-based bivalent PCSK9 vaccine lowers LDL-cholesterol levels in non-human primates von Fowler, Alexandra, Van Rompay, Koen K. A., Sampson, Maureen, Leo, Javier, Watanabe, Jennifer K., Usachenko, Jodie L., Immareddy, Ramya, Lovato, Debbie M., Schiller, John T., Remaley, Alan T., Chackerian, Bryce

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Maternal-Fetal Pharmacokinetics and Dynamics of a Single Intrapartum Dose of Maraviroc in Rhesus Macaques von WINTERS, Mark A, VAN ROMPAY, Koen K. A, KASHUBA, Angela D. M, SHULMAN, Nancy S, HOLODNIY, Mark

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Chronic Administration of Tenofovir to Rhesus Macaques from Infancy through Adulthood and Pregnancy: Summary of Pharmacokinetics and Biological and Virological Effects von VAN ROMPAY, Koen K. A, DURAND-GASSELIN, Lucie, MARTHAS, Marta L, REISER, Hans, BISCHOFBERGER, Norbert, BRIGNOLO, Laurie L, RAY, Adrian S, ABEL, Kristina, CIHLAR, Tomas, SPINNER, Abigail, JEROME, Christopher, MOORE, Joseph, KEARNEY, Brian P

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Reduction of pyramidal and immature hippocampal neurons in pediatric simian immunodeficiency virus infection von Curtis, Kimberly, Rollins, Matthew, Carryl, Heather, Van Rompay, Koen K.A, Abel, Kristina, Burke, Mark W

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Pharmacokinetics and Safety of Single-Dose Tenofovir Disoproxil Fumarate and Emtricitabine in HIV-1-Infected Pregnant Women and Their Infants von FLYNN, Patricia M, MIROCHNICK, Mark, KEARNEY, Brian, MOFENSON, Lynne M, HEATHER WATTS, D, JEAN-PHILIPPE, Patrick, HECKMAN, Barbara, THORPE, Edwin, COTTER, Amanda, PURSWANI, Murli, SHAPIRO, David E, BARDEGUEZ, Arlene, RODMAN, John, ROBBINS, Brian, HUANG, Sharon, FISCUS, Susan A, VAN ROMPAY, Koen K. A, ROONEY, James F

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Suppression of Virus Load by Highly Active Antiretroviral Therapy in Rhesus Macaques Infected with a Recombinant Simian Immunodeficiency Virus Containing Reverse Transcriptase from... von NORTH, Thomas W, VAN ROMPAY, Koen K. A, HIGGINS, Joanne, MATTHEWS, Timothy B, WADFORD, Debra A, PEDERSEN, Niels C, SCHINAZI, Raymond F

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Conjugation of HIV-1 envelope to hepatitis B surface antigen alters vaccine responses in rhesus macaques von Nettere, Danielle, Unnithan, Shakthi, Rodgers, Nicole, Nohara, Junsuke, Cray, Paul, Berry, Madison, Jones, Caroline, Armand, Lawrence, Li, Shuk Hang, Berendam, Stella J., Fouda, Genevieve G., Cain, Derek W., Spence, Taylor N., Granek, Joshua A., Davenport, Clemontina A., Edwards, Robert J., Wiehe, Kevin, Van Rompay, Koen K. A., Moody, M. Anthony, Permar, Sallie R., Pollara, Justin

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Genomic insights into the host specific adaptation of the Pneumocystis genus von Cissé, Ousmane H., Ma, Liang, Dekker, John P., Khil, Pavel P., Youn, Jung-Ho, Brenchley, Jason M., Blair, Robert, Pahar, Bapi, Chabé, Magali, Van Rompay, Koen K. A., Keesler, Rebekah, Sukura, Antti, Hirsch, Vanessa, Kutty, Geetha, Liu, Yueqin, Peng, Li, Chen, Jie, Song, Jun, Weissenbacher-Lang, Christiane, Xu, Jie, Upham, Nathan S., Stajich, Jason E., Cuomo, Christina A., Cushion, Melanie T., Kovacs, Joseph A.

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SARS-CoV-2 induces robust germinal center CD4 T follicular helper cell responses in rhesus macaques von Shaan Lakshmanappa, Yashavanth, Elizaldi, Sonny R., Roh, Jamin W., Schmidt, Brian A., Carroll, Timothy D., Weaver, Kourtney D., Smith, Justin C., Verma, Anil, Deere, Jesse D., Dutra, Joseph, Stone, Mars, Franz, Sergej, Sammak, Rebecca Lee, Olstad, Katherine J., Rachel Reader, J., Ma, Zhong-Min, Nguyen, Nancy K., Watanabe, Jennifer, Usachenko, Jodie, Immareddy, Ramya, Yee, JoAnn L., Weiskopf, Daniela, Sette, Alessandro, Hartigan-O’Connor, Dennis, McSorley, Stephen J., Morrison, John H., Tran, Nam K., Simmons, Graham, Busch, Michael P., Kozlowski, Pamela A., Van Rompay, Koen K. A., Miller, Christopher J., Iyer, Smita S.

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