Spatial partitioning of the regulatory landscape of the X-inactivation centre von Nora, Elphège P., Lajoie, Bryan R., Schulz, Edda G., Giorgetti, Luca, Okamoto, Ikuhiro, Servant, Nicolas, Piolot, Tristan, van Berkum, Nynke L., Meisig, Johannes, Sedat, John, Gribnau, Joost, Barillot, Emmanuel, Blüthgen, Nils, Dekker, Job, Heard, Edith

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A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae von Benschop, Joris J., Brabers, Nathalie, van Leenen, Dik, Bakker, Linda V., van Deutekom, Hanneke W.M., van Berkum, Nynke L., Apweiler, Eva, Lijnzaad, Philip, Holstege, Frank C.P., Kemmeren, Patrick

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Mediator and cohesin connect gene expression and chromatin architecture von Taatjes, Dylan J, van Berkum, Nynke L, Young, Richard A, Kagey, Michael H, Bilodeau, Steve, Zhan, Ye, Ebmeier, Christopher C, Levine, Stuart S, Newman, Jamie J, Rahl, Peter B, Dekker, Job, Goossens, Jesse, Orlando, David A

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Hi-C: a method to study the three-dimensional architecture of genomes von van Berkum, Nynke L, Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A, Dekker, Job, Lander, Eric S

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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome von Lieberman-Aiden, Erez, van Berkum, Nynke L, Williams, Louise, Imakaev, Maxim, Ragoczy, Tobias, Telling, Agnes, Amit, Ido, Lajoie, Bryan R, Sabo, Peter J, Dorschner, Michael O, Sandstrom, Richard, Bernstein, Bradley, Bender, M.A, Groudine, Mark, Gnirke, Andreas, Stamatoyannopoulos, John, Mirny, Leonid A, Lander, Eric S, Dekker, Job

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Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome-Scale Data von Kemmeren, Patrick, van Berkum, Nynke L., Vilo, Jaak, Bijma, Theo, Donders, Rogier, Brazma, Alvis, Holstege, Frank C.P.

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My5C: web tools for chromosome conformation capture studies von Dekker, Job, Lajoie, Bryan R, van Berkum, Nynke L, Sanyal, Amartya

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Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits von Albert, T K, Lemaire, M, van Berkum, N L, Gentz, R, Collart, M A, Timmers, H T

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Genome-Wide Analyses Reveal RNA Polymerase II Located Upstream of Genes Poised for Rapid Response upon S. cerevisiae Stationary Phase Exit von Radonjic, Marijana, Andrau, Jean-Christophe, Lijnzaad, Philip, Kemmeren, Patrick, Kockelkorn, Thessa T.J.P., van Leenen, Dik, van Berkum, Nynke L., Holstege, Frank C.P.

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Evidence for transcript networks composed of chimeric RNAs in human cells von Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent, Borel, Christelle, Mudge, Jonathan M, Howald, Cédric, Foissac, Sylvain, Ucla, Catherine, Chrast, Jacqueline, Ribeca, Paolo, Martin, David, Murray, Ryan R, Yang, Xinping, Ghamsari, Lila, Lin, Chenwei, Bell, Ian, Dumais, Erica, Drenkow, Jorg, Tress, Michael L, Gelpí, Josep Lluís, Orozco, Modesto, Valencia, Alfonso, van Berkum, Nynke L, Lajoie, Bryan R, Vidal, Marc, Stamatoyannopoulos, John, Batut, Philippe, Dobin, Alex, Harrow, Jennifer, Hubbard, Tim, Dekker, Job, Frankish, Adam, Salehi-Ashtiani, Kourosh, Reymond, Alexandre, Antonarakis, Stylianos E, Guigó, Roderic, Gingeras, Thomas R

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A high resolution protein interaction map of the yeast Mediator complex von Guglielmi, Benjamin, van Berkum, Nynke L., Klapholz, Benjamin, Bijma, Theo, Boube, Muriel, Boschiero, Claire, Bourbon, Henri-Marc, Holstege, Frank C. P., Werner, Michel

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Determining Spatial Chromatin Organization of Large Genomic Regions Using 5C Technology von van Berkum, Nynke L., Dekker, Job

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Erratum: Mediator and cohesin connect gene expression and chromatin architecture von Kagey, Michael H., Newman, Jamie J., Bilodeau, Steve, Zhan, Ye, Orlando, David A., van Berkum, Nynke L., Ebmeier, Christopher C., Goossens, Jesse, Rahl, Peter B., Levine, Stuart S., Taatjes, Dylan J., Dekker, Job, Young, Richard A.

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DNA microarrays: raising the profile von van Berkum, Nynke L, Holstege, Frank CP

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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes von van Berkum, Nynke L., Lieberman-Aiden, Erez, Williams, Louise, Imakaev, Maxim, Gnirke, Andreas, Mirny, Leonid A., Dekker, Job, Lander, Eric S.

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Mediator and cohesin connect gene expression and chromatin architecture

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My5C: webtools for chromosome conformation capture studies von Lajoie, Bryan R., van Berkum, Nynke L., Sanyal, Amartya, Dekker, Job

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Spatial partitioning of the regulatory landscape of the X-inactivation centre von Nora, Elphege P, Lajoie, Bryan R, Schulz, Edda G, Giorgetti, Luca, Okamoto, Ikuhiro, Servant, Nicolas, Piolot, Tristan, van Berkum, Nynke L, Meisig, Johannes, Sedat, John, Gribnau, Joost, Barillot, Emmanuel, Bluthgen, Nils, Dekker, Job, Heard, Edith

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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells von Djebali, Sarah, Lagarde, Julien, Kapranov, Philipp, Lacroix, Vincent, Borel, Christelle, Mudge, Jonathan M, Howald, Cédric, Foissac, Sylvain, Ucla, Catherine, Chrast, Jacqueline, Ribeca, Paolo, Murray, Ryan R, Lin, Chenwei, Bell, Ian, Dumais, Erica, Drenkow, Jorg, Tress, Michael L, Gelpí, Josep Lluís, Orozco, Modesto, Valencia, Alfonso, van Berkum, Nynke L, Lajoie, Bryan R, Stamatoyannopoulos, John, Batut, Philippe, Dobin, Alex, Harrow, Jennifer, Hubbard, Tim, Dekker, Job, Frankish, Adam, Salehi-Ashtiani, Kourosh, Reymond, Alexandre, Antonarakis, Stylianos E, Guigó, Roderic, Gingeras, Thomas R, Martin, David, Yang, Xinping, Ghamsari, Lila, Vidal, Marc

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Evidence for transcript networks composed of chimeric RNAs in human cells von Djebali, Sarah, Lagarde, Julien, Lacroix, Vincent, Foissac, Sylvain, Ribeca, Paolo, Martin, David, Guigó Serra, Roderic, Gingeras, Thomas R

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