Transcript von Symposium

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LsRTDv1, a reference transcript dataset for accurate transcript‐specific expression analysis in lettuce von Kara, Mehmet Fatih, Guo, Wenbin, Zhang, Runxuan, Denby, Katherine

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Edition transcript: Necessity, Evolution and Dilemmas of a Brotherhood von Gerhard H. Wächter

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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown von Pertea, Mihaela, Kim, Daehwan, Pertea, Geo M, Leek, Jeffrey T, Salzberg, Steven L

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Massively Systematic Transcript End Readout, “MASTER”: Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields von Vvedenskaya, Irina O., Zhang, Yuanchao, Goldman, Seth R., Valenti, Anna, Visone, Valeria, Taylor, Deanne M., Ebright, Richard H., Nickels, Bryce E.

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AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana von Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.

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TSEBRA: transcript selector for BRAKER von Gabriel, Lars, Hoff, Katharina J., Bruna, Tomas, Borodovsky, Mark, Stanke, Mario

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Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods von Haas, Brian J, Dobin, Alexander, Li, Bo, Stransky, Nicolas, Pochet, Nathalie, Regev, Aviv

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Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs von Papavasiliou, F Nina, Rosenberg, Brad R, Hamilton, Claire E, Mwangi, Michael M, Dewell, Scott

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Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments von Petryszak, Robert, Burdett, Tony, Fiorelli, Benedetto, Fonseca, Nuno A, Gonzalez-Porta, Mar, Hastings, Emma, Huber, Wolfgang, Jupp, Simon, Keays, Maria, Kryvych, Nataliya, McMurry, Julie, Marioni, John C, Malone, James, Megy, Karine, Rustici, Gabriella, Tang, Amy Y, Taubert, Jan, Williams, Eleanor, Mannion, Oliver, Parkinson, Helen E, Brazma, Alvis

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Transcripts

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Long-Read cDNA Sequencing Enables a “Gene-Like” Transcript Annotation of Transposable Elements von Panda, Kaushik, Slotkin, R. Keith

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Salmon provides fast and bias-aware quantification of transcript expression von Patro, Rob, Duggal, Geet, Love, Michael I, Irizarry, Rafael A, Kingsford, Carl

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Transcript-RNA-templated DNA recombination and repair von Keskin, Havva, Shen, Ying, Huang, Fei, Patel, Mikir, Yang, Taehwan, Ashley, Katie, Mazin, Alexander V., Storici, Francesca

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HOX transcript antisense RNA (HOTAIR) in cancer von Qu, Xiaohan, Alsager, Simon, Zhuo, Ying, Shan, Bin

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ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2 von Gustavsson, Emil K, Zhang, David, Reynolds, Regina H, Garcia-Ruiz, Sonia, Ryten, Mina

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Ryūtō: improved multi-sample transcript assembly for differential transcript expression analysis and more von Gatter, Thomas, Stadler, Peter F

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Measure transcript integrity using RNA-seq data von Wang, Liguo, Nie, Jinfu, Sicotte, Hugues, Li, Ying, Eckel-Passow, Jeanette E, Dasari, Surendra, Vedell, Peter T, Barman, Poulami, Wang, Liewei, Weinshiboum, Richard, Jen, Jin, Huang, Haojie, Kohli, Manish, Kocher, Jean-Pierre A

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Precise transcript targeting by CRISPR-Csm complexes von Colognori, David, Trinidad, Marena, Doudna, Jennifer A.

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation von Pachter, Lior, Trapnell, Cole, Williams, Brian A, Pertea, Geo, Mortazavi, Ali, Kwan, Gordon, van Baren, Marijke J, Salzberg, Steven L, Wold, Barbara J

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