The molecular basis of drug resistance against hepatitis C virus NS3/4A protease inhibitors von Romano, Keith P, Ali, Akbar, Aydin, Cihan, Soumana, Djade, Ozen, Ayşegül, Deveau, Laura M, Silver, Casey, Cao, Hong, Newton, Alicia, Petropoulos, Christos J, Huang, Wei, Schiffer, Celia A

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Genetic and Immunologic Heterogeneity among Persons Who Control HIV Infection in the Absence of Therapy von Pereyra, Florencia, Addo, Marylyn M., Kaufmann, Daniel E., Liu, Yang, Miura, Toshiyuki, Rathod, Almas, Baker, Brett, Trocha, Alicja, Rosenberg, Rachel, Mackey, Elizabeth, Ueda, Peggy, Lu, Zhigang, Cohen, Daniel, Wrin, Terri, Petropoulos, Christos J., Rosenberg, Eric S., Walker, Bruce D.

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Calibration of two validated SARS-CoV-2 pseudovirus neutralization assays for COVID-19 vaccine evaluation von Huang, Yunda, Borisov, Oleg, Kee, Jia Jin, Carpp, Lindsay N., Wrin, Terri, Cai, Suqin, Sarzotti-Kelsoe, Marcella, McDanal, Charlene, Eaton, Amanda, Pajon, Rolando, Hural, John, Posavad, Christine M., Gill, Katherine, Karuna, Shelly, Corey, Lawrence, McElrath, M. Juliana, Gilbert, Peter B., Petropoulos, Christos J., Montefiori, David C.

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Quantitative SARS-CoV-2 Spike Receptor-Binding Domain and Neutralizing Antibody Titers in Previously Infected Persons, United States, January 2021-February 2022 von Bratcher, Anna, Kao, Szu-Yu, Chun, Kelly, Petropoulos, Christos J, Gundlapalli, Adi V, Jones, Jefferson, Clarke, Kristie E N

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Rapid Evolution of the Neutralizing Antibody Response to HIV Type 1 Infection von Richman, Douglas D., Wrin, Terri, Little, Susan J., Petropoulos, Christos J.

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Loss of Raltegravir Susceptibility by Human Immunodeficiency Virus Type 1 Is Conferred via Multiple Nonoverlapping Genetic Pathways von FRANSEN, Signe, GUPTA, Soumi, DANOVICH, Robert, HAZUDA, Daria, MILLER, Michael, WITMER, Marc, PETROPOULOS, Christos J, WEI HUANG

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Hepatitis C Virus NS3/4A Protease Inhibitors Incorporating Flexible P2 Quinoxalines Target Drug Resistant Viral Variants von Matthew, Ashley N, Zephyr, Jacqueto, Hill, Caitlin. J, Jahangir, Muhammad, Newton, Alicia, Petropoulos, Christos J, Huang, Wei, Kurt-Yilmaz, Nese, Schiffer, Celia A, Ali, Akbar

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Exploring the complexity of the HIV-1 fitness landscape von Kouyos, Roger D, Leventhal, Gabriel E, Hinkley, Trevor, Haddad, Mojgan, Whitcomb, Jeannette M, Petropoulos, Christos J, Bonhoeffer, Sebastian

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Drug resistance emergence in macaques administered cabotegravir long-acting for pre-exposure prophylaxis during acute SHIV infection von Radzio-Basu, Jessica, Council, Olivia, Cong, Mian-er, Ruone, Susan, Newton, Alicia, Wei, Xierong, Mitchell, James, Ellis, Shanon, Petropoulos, Christos J., Huang, Wei, Spreen, William, Heneine, Walid, García-Lerma, J. Gerardo

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Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1 von Moradigaravand, Danesh, Kouyos, Roger, Hinkley, Trevor, Haddad, Mojgan, Petropoulos, Christos J, Engelstädter, Jan, Bonhoeffer, Sebastian

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Comprehensive Cross-Clade Neutralization Analysis of a Panel of Anti-Human Immunodeficiency Virus Type 1 Monoclonal Antibodies von Binley, James M, Wrin, Terri, Korber, Bette, Zwick, Michael B, Wang, Meng, Chappey, Colombe, Stiegler, Gabriela, Kunert, Renate, Zolla-Pazner, Susan, Katinger, Hermann, Petropoulos, Christos J, Burton, Dennis R

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Development and Characterization of a Novel Single-Cycle Recombinant-Virus Assay To Determine Human Immunodeficiency Virus Type 1 Coreceptor Tropism von Whitcomb, Jeannette M, Huang, Wei, Fransen, Signe, Limoli, Kay, Toma, Jonathan, Wrin, Terri, Chappey, Colombe, Kiss, Linda D B, Paxinos, Ellen E, Petropoulos, Christos J

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A program for real-time surveillance of SARS-CoV-2 genetics von Brochu, Hayden N., Song, Kuncheng, Zhang, Qimin, Zeng, Qiandong, Shafi, Adib, Robinson, Matthew, Humphrey, Jake, Croy, Bobbi, Peavy, Lydia, Perera, Minoli, Parker, Scott, Pruitt, John, Munroe, Jason, Ghatti, Rama, Urban, Thomas J., Harris, Ayla B., Alfego, David, Norvell, Brian, Levandoski, Michael, Krueger, Brian, Williams, Jonathan D., Boles, Deborah, Nye, Melinda B., Dale, Suzanne E., Sapeta, Michael, Petropoulos, Christos J., Meltzer, Jonathan, Eisenberg, Marcia, Cohen, Oren, Letovsky, Stanley, Iyer, Lakshmanan K.

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Multiple Genetic Pathways Involving Amino Acid Position 143 of HIV-1 Integrase Are Preferentially Associated with Specific Secondary Amino Acid Substitutions and Confer Resistance... von WEI HUANG, FRANTZELL, Arne, FRANSEN, Signe, PETROPOULOS, Christos J

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Persistence of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection von LITTLE, Susan J, FROST, Simon D. W, WONG, Joseph K, SMITH, Davey M, KOSAKOVSKY POND, Sergei L, IGNACIO, Caroline C, PARKIN, Neil T, PETROPOULOS, Christos J, RICHMAN, Douglas D

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Substitutions at Amino Acid Positions 143, 148, and 155 of HIV-1 Integrase Define Distinct Genetic Barriers to Raltegravir Resistance In Vivo von FRANSEN, Signe, GUPTA, Soumi, FRANTZELL, Arne, PETROPOULOS, Christos J, WEI HUANG

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Global seroprevalence of neutralizing antibodies against adeno-associated virus serotypes used for human gene therapies von Chhabra, Amit, Bashirians, George, Petropoulos, Christos J., Wrin, Terri, Paliwal, Yuvika, Henstock, Peter V., Somanathan, Suryanarayan, da Fonseca Pereira, Candida, Winburn, Ian, Rasko, John E.J.

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Neutralizing Antibody Responses Drive the Evolution of Human Immunodeficiency Virus Type 1 Envelope during Recent HIV Infection von Simon D. W. Frost, Wrin, Terri, Davey M. Smith, Sergei L. Kosakovsky Pond, Liu, Yang, Paxinos, Ellen, Chappey, Colombe, Justin Galovich, Jeff Beauchaine, Petropoulos, Christos J., Little, Susan J., Richman, Douglas D., Martin, Malcolm A.

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Broad Nucleoside Reverse-Transcriptase Inhibitor Cross-Resistance in Human Immunodeficiency Virus Type 1 Clinical Isolates von Whitcomb, Jeannette M., Parkin, Neil T., Chappey, Colombe, Hellmann, Nicholas S., Petropoulos, Christos J.

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Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing von Bunnik, Evelien M, Swenson, Luke C, Edo-Matas, Diana, Huang, Wei, Dong, Winnie, Frantzell, Arne, Petropoulos, Christos J, Coakley, Eoin, Schuitemaker, Hanneke, Harrigan, P Richard, van 't Wout, Angélique B

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