Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming von Stadhouders, Ralph, Vidal, Enrique, Serra, François, Di Stefano, Bruno, Le Dily, François, Quilez, Javier, Gomez, Antonio, Collombet, Samuel, Berenguer, Clara, Cuartero, Yasmina, Hecht, Jochen, Filion, Guillaume J., Beato, Miguel, Marti-Renom, Marc A., Graf, Thomas

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Signaling by Steroid Hormones in the 3D Nuclear Space von Le Dily, François, Beato, Miguel

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Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization von Kojic, Aleksandar, Cuadrado, Ana, De Koninck, Magali, Giménez-Llorente, Daniel, Rodríguez-Corsino, Miriam, Gómez-López, Gonzalo, Le Dily, François, Marti-Renom, Marc A., Losada, Ana

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The impact of chromosomal fusions on 3D genome folding and recombination in the germ line von Vara, Covadonga, Paytuví-Gallart, Andreu, Cuartero, Yasmina, Álvarez-González, Lucía, Marín-Gual, Laia, Garcia, Francisca, Florit-Sabater, Beatriu, Capilla, Laia, Sanchéz-Guillén, Rosa Ana, Sarrate, Zaida, Aiese Cigliano, Riccardo, Sanseverino, Walter, Searle, Jeremy B., Ventura, Jacint, Marti-Renom, Marc A., Le Dily, François, Ruiz-Herrera, Aurora

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Coordinated changes in gene expression, H1 variant distribution and genome 3D conformation in response to H1 depletion von Serna-Pujol, Núria, Salinas-Pena, Mónica, Mugianesi, Francesca, Le Dily, François, Marti-Renom, Marc A, Jordan, Albert

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ATP, Mg2+, Nuclear Phase Separation, and Genome Accessibility von Wright, Roni H.G., Le Dily, Francois, Beato, Miguel

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Rapid reversible changes in compartments and local chromatin organization revealed by hyperosmotic shock von Amat, Ramon, Böttcher, René, Le Dily, François, Vidal, Enrique, Quilez, Javier, Cuartero, Yasmina, Beato, Miguel, de Nadal, Eulàlia, Posas, Francesc

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Lamin B1 mapping reveals the existence of dynamic and functional euchromatin lamin B1 domains von Pascual-Reguant, Laura, Blanco, Enrique, Galan, Silvia, Le Dily, François, Cuartero, Yasmina, Serra-Bardenys, Gemma, Di Carlo, Valerio, Iturbide, Ane, Cebrià-Costa, Joan Pau, Nonell, Lara, de Herreros, Antonio García, Di Croce, Luciano, Marti-Renom, Marc A., Peiró, Sandra

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Nucleosome-Driven Transcription Factor Binding and Gene Regulation von Ballaré, Cecilia, Castellano, Giancarlo, Gaveglia, Laura, Althammer, Sonja, González-Vallinas, Juan, Eyras, Eduardo, Le Dily, Francois, Zaurin, Roser, Soronellas, Daniel, Vicent, Guillermo P., Beato, Miguel

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90 YEARS OF PROGESTERONE: Molecular mechanisms of progesterone receptor action on the breast cancer genome von Beato, Miguel, Wright, Roni H G, Dily, François Le

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Chromatin topology defines estradiol-primed progesterone receptor and PAX2 binding in endometrial cancer cells von La Greca, Alejandro, Bellora, Nicolás, Le Dily, François, Jara, Rodrigo, Nacht, Ana Silvina, Quilez Oliete, Javier, Villanueva, José Luis, Vidal, Enrique, Merino, Gabriela, Fresno, Cristóbal, Tarifa Reischle, Inti, Vallejo, Griselda, Vicent, Guillermo, Fernández, Elmer, Beato, Miguel, Saragüeta, Patricia

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Differential estrogen-regulation of CXCL12 chemokine receptors, CXCR4 and CXCR7, contributes to the growth effect of estrogens in breast cancer cells von Boudot, Antoine, Kerdivel, Gwenneg, Habauzit, Denis, Eeckhoute, Jerome, Le Dily, François, Flouriot, Gilles, Samson, Michel, Pakdel, Farzad

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In vivo temporal resolution of acute promyelocytic leukemia progression reveals a role of Klf4 in suppressing early leukemic transformation von Mas, Glòria, Santoro, Fabio, Blanco, Enrique, Gamarra Figueroa, Gianni Paolo, Le Dily, François, Frigè, Gianmaria, Vidal, Enrique, Mugianesi, Francesca, Ballaré, Cecilia, Gutierrez, Arantxa, Sparavier, Aleksandra, Marti-Renom, Marc A, Minucci, Saverio, Di Croce, Luciano

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Unliganded Progesterone Receptor Governs Estrogen Receptor Gene Expression by Regulating DNA Methylation in Breast Cancer Cells von Verde, Gaetano, De Llobet, Lara I, Wright, Roni H G, Quilez, Javier, Peiró, Sandra, Le Dily, François, Beato, Miguel

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3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data? von Le Dily, François, Serra, François, Marti‐Renom, Marc A.

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CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response von Stik, Grégoire, Vidal, Enrique, Barrero, Mercedes, Cuartero, Sergi, Vila-Casadesús, Maria, Mendieta-Esteban, Julen, Tian, Tian V., Choi, Jinmi, Berenguer, Clara, Abad, Amaya, Borsari, Beatrice, le Dily, François, Cramer, Patrick, Marti-Renom, Marc A., Stadhouders, Ralph, Graf, Thomas

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Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation von Le Dily, François, Baù, Davide, Pohl, Andy, Vicent, Guillermo P, Serra, François, Soronellas, Daniel, Castellano, Giancarlo, Wright, Roni H G, Ballare, Cecilia, Filion, Guillaume, Marti-Renom, Marc A, Beato, Miguel

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TADs as modular and dynamic units for gene regulation by hormones von Le Dily, François, Beato, Miguel

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Promoter bivalency favors an open chromatin architecture in embryonic stem cells von Mas, Glòria, Blanco, Enrique, Ballaré, Cecilia, Sansó, Miriam, Spill, Yannick G., Hu, Deqing, Aoi, Yuki, Le Dily, François, Shilatifard, Ali, Marti-Renom, Marc A., Di Croce, Luciano

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Parallel sequencing lives, or what makes large sequencing projects successful von Quilez, Javier, Vidal, Enrique, Dily, François Le, Serra, François, Cuartero, Yasmina, Stadhouders, Ralph, Graf, Thomas, Marti-Renom, Marc A, Beato, Miguel, Filion, Guillaume

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