Ten simple rules for responsible big data research von Zook, Matthew, Barocas, Solon, Boyd, Danah, Crawford, Kate, Keller, Emily, Gangadharan, Seeta Peña, Goodman, Alyssa, Hollander, Rachelle, Koenig, Barbara A, Metcalf, Jacob, Narayanan, Arvind, Nelson, Alondra, Pasquale, Frank

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Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks von Rule, Adam, Birmingham, Amanda, Zuniga, Cristal, Altintas, Ilkay, Huang, Shih-Cheng, Knight, Rob, Moshiri, Niema, Nguyen, Mai H, Rosenthal, Sara Brin, Pérez, Fernando, Rose, Peter W

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Problem structuring methods ‘in the Dock’: Arguing the case for Soft OR von Ackermann, Fran

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Protein-protein interactions essentials: key concepts to building and analyzing interactome networks von De Las Rivas, Javier, Fontanillo, Celia

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Practical guidelines for the comprehensive analysis of ChIP-seq data von Bailey, Timothy, Krajewski, Pawel, Ladunga, Istvan, Lefebvre, Celine, Li, Qunhua, Liu, Tao, Madrigal, Pedro, Taslim, Cenny, Zhang, Jie

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Chapter 4: Protein interactions and disease von Gonzalez, Mileidy W, Kann, Maricel G

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Researching Within-Household Distribution: Overview, Developments, Debates, and Methodological Challenges von Bennett, Fran

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Managing grand challenges: Extending the scope of problem structuring methods and behavioural operational research von Ackermann, Fran

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Support vector machines and kernels for computational biology von Ben-Hur, Asa, Ong, Cheng Soon, Sonnenburg, Sören, Schölkopf, Bernhard, Rätsch, Gunnar

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Ten simple rules towards healthier research labs von Maestre, Fernando T

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Ten Simple Rules for Effective Statistical Practice von Kass, Robert E, Caffo, Brian S, Davidian, Marie, Meng, Xiao-Li, Yu, Bin, Reid, Nancy

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Chapter 11: Genome-wide association studies von Bush, William S, Moore, Jason H

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Machine learning and its applications to biology von Tarca, Adi L, Carey, Vincent J, Chen, Xue-wen, Romero, Roberto, Drăghici, Sorin

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Global patterns in the publishing of academic knowledge: Global North, global South von Collyer, Fran M

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Functional Network Organization of the Human Brain von Power, Jonathan D., Cohen, Alexander L., Nelson, Steven M., Wig, Gagan S., Barnes, Kelly Anne, Church, Jessica A., Vogel, Alecia C., Laumann, Timothy O., Miezin, Fran M., Schlaggar, Bradley L., Petersen, Steven E.

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Ten simple rules for collaboratively writing a multi-authored paper von Frassl, Marieke A, Hamilton, David P, Denfeld, Blaize A, de Eyto, Elvira, Hampton, Stephanie E, Keller, Philipp S, Sharma, Sapna, Lewis, Abigail S L, Weyhenmeyer, Gesa A, O'Reilly, Catherine M, Lofton, Mary E, Catalán, Núria

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Theory into practice, practice to theory: Action research in method development von Eden, Colin, Ackermann, Fran

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Chapter 12: Human microbiome analysis von Morgan, Xochitl C, Huttenhower, Curtis

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Ten simple rules for providing effective bioinformatics research support von Kumuthini, Judit, Chimenti, Michael, Nahnsen, Sven, Peltzer, Alexander, Meraba, Rebone, McFadyen, Ross, Wells, Gordon, Taylor, Deanne, Maienschein-Cline, Mark, Li, Jian-Liang, Thimmapuram, Jyothi, Murthy-Karuturi, Radha, Zass, Lyndon

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The Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function von Supek, Fran

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