Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions von Sivade Dumousseau, M, Alonso-López, D, Ammari, M, Bradley, G, Campbell, N H, Ceol, A, Cesareni, G, Combe, C, De Las Rivas, J, Del-Toro, N, Heimbach, J, Hermjakob, H, Jurisica, I, Koch, M, Licata, L, Lovering, R C, Lynn, D J, Meldal, B H M, Micklem, G, Panni, S, Porras, P, Ricard-Blum, S, Roechert, B, Salwinski, L, Shrivastava, A, Sullivan, J, Thierry-Mieg, N, Yehudi, Y, Van Roey, K, Orchard, S

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Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions von Tolios, A., De Las Rivas, J., Hovig, E., Trouillas, P., Scorilas, A., Mohr, T.

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Gene expression profiling of B lymphocytes and plasma cells from Waldenström's macroglobulinemia : comparison with expression patterns of the same cell counterparts from chronic ly... von GUTIERREZ, N. C, OCIO, E. M, DE LAS RIVAS, J, MAISO, P, DELGADO, M, FERMINAN, E, ARCOS, M. J, SANCHEZ, M. L, HERNANDEZ, J. M, SAN MIGUEL, J. F

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miRNA cargo within exosome-like vesicle transfer influences metastatic bone colonization von Valencia, Karmele, Luis-Ravelo, Diego, Bovy, Nicolas, Antón, Iker, Martínez-Canarias, Susana, Zandueta, Carolina, Ormazábal, Cristina, Struman, Ingrid, Tabruyn, Sébastien, Rebmann, Vera, De Las Rivas, J., Guruceaga, Elisabet, Bandrés, Eva, Lecanda, Fernando

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Deregulation of microRNA expression in the different genetic subtypes of multiple myeloma and correlation with gene expression profiling von Gutiérrez, N C, Sarasquete, M E, Misiewicz-Krzeminska, I, Delgado, M, De Las Rivas, J, Ticona, F V, Fermiñán, E, Martín-Jiménez, P, Chillón, C, Risueño, A, Hernández, J M, García-Sanz, R, González, M, San Miguel, J F

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DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling von Campos-Laborie, F J, Risueño, A, Ortiz-Estévez, M, Rosón-Burgo, B, Droste, C, Fontanillo, C, Loos, R, Sánchez-Santos, J M, Trotter, M W, De Las Rivas, J

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A gene signature of bone metastatic colonization sensitizes for tumor-induced osteolysis and predicts survival in lung cancer von Luis-Ravelo, D, Antón, I, Zandueta, C, Valencia, K, Ormazábal, C, Martínez-Canarias, S, Guruceaga, E, Perurena, N, Vicent, S, De Las Rivas, J, Lecanda, F

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Transcriptional networks of knockout cell lines identify functional specificities of H-Ras and N-Ras: significant involvement of N-Ras in biotic and defense responses von Castellano, E, De Las Rivas, J, Guerrero, C, Santos, E

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Genome-wide profiling of methylation identifies novel targets with aberrant hypermethylation and reduced expression in low-risk myelodysplastic syndromes von del Rey, M, O'Hagan, K, Dellett, M, Aibar, S, Colyer, H A A, Alonso, M E, Díez-Campelo, M, Armstrong, R N, Sharpe, D J, Gutiérrez, N C, García, J L, De Las Rivas, J, Mills, K I, Hernández-Rivas, J M

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JAMI: a Java library for molecular interactions and data interoperability von Sivade Dumousseau, M, Koch, M, Shrivastava, A, Alonso-López, D, De Las Rivas, J, Del-Toro, N, Combe, C W, Meldal, B H M, Heimbach, J, Rappsilber, J, Sullivan, J, Yehudi, Y, Orchard, S

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Interleukin-12 inhibits liver-specific drug-inducible systems in vivo von Reboredo, M, Zabala, M, Mauleon, I, De Las Rivas, J, Kreppel, F, Kochanek, S, Prieto, J, Hernandez-Alcoceba, R, Kramer, M G

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Identification of a novel recurrent gain on 20q13 in chronic lymphocytic leukemia by array CGH and gene expression profiling von Rodríguez, A.E., Robledo, C., García, J.L., González, M., Gutiérrez, N.C., Hernández, J.A., Sandoval, V., García de Coca, A., Recio, I., Risueño, A., Martín-Núñez, G., García, E., Fisac, R., Conde, J., de las Rivas, J., Hernández, J.M.

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Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes von Prieto, C., Rivas, M.J., Sánchez, J.M., López-Fidalgo, J., De Las Rivas, J.

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Mobilisation with G-CSF in healthy donors promotes a high but temporal deregulation of genes von Hernández, J M, Castilla, C, Gutiérrez, N C, Isidro, I M, Delgado, M, de las Rivas, J, Fermiñán, E, García, J L, Ocio, E M, del Cañizo, M C, San Miguel, J F

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MicroRNA (miR)‐203 and miR‐205 expression patterns identify subgroups of prognosis in cutaneous squamous cell carcinoma von Cañueto, J., Cardeñoso‐Álvarez, E., García‐Hernández, J.L., Galindo‐Villardón, P., Vicente‐Galindo, P., Vicente‐Villardón, J.L., Alonso‐López, D., De Las Rivas, J., Valero, J., Moyano‐Sanz, E., Fernández‐López, E., Mao, J.H., Castellanos‐Martín, A., Román‐Curto, C., Pérez‐Losada, J.

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Analysis of the structure of the PsbO protein and its implications. [Erratum: 2004, v. 82, no. 2, p. 199, 329-343.] von Rivas, J. de las, Barber, J

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Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome von Prieto, C., De Las Rivas, J.

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Bioinformatics training: a review of challenges, actions and support requirements von Schneider, Maria Victoria, Watson, James, Attwood, Teresa, Rother, Kristian, Budd, Aidan, McDowall, Jennifer, Via, Allegra, Fernandes, Pedro, Nyronen, Tommy, Blicher, Thomas, Jones, Phil, Blatter, Marie-Claude, De Las Rivas, Javier, Judge, David Phillip, van der Gool, Wouter, Brooksbank, Cath

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Segmentation of genomic and transcriptomic microarrays data reveals major correlation between DNA copy number aberrations and gene–loci expression von Ortiz-Estevez, M., De Las Rivas, J., Fontanillo, C., Rubio, A.

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Responses of Sugar Beet Roots to Iron Deficiency. Changes in Carbon Assimilation and Oxygen Use von LOPEZ-MILLAN, Ana Flor, MORALES, Fermin, ANDALUZ, Sofia, GOGORCENA, Yolanda, ABADIA, Anunciacion, DE LAS RIVAS, Javier, ABADIA, Javier

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