An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison von Sandes, Edans Flavius de O., Ghedini Ralha, Célia, de Melo, Alba Cristina M.A.

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Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU von de O Sandes, E. F., de Melo, A. C. M. A.

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MASA‐OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL von Figueiredo, Marco Antonio C., Oliveira Sandes, Edans F., Rodrigues, Genaina N., Teodoro, George L. M., Melo, Alba Cristina M. A.

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A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space von Boukerche, Azzedine, Correa, Jan M, Melo, Alba, Jacobi, Ricardo P

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CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences von Sandes, Edans Flavius O., de Melo, Alba Cristina M.A.

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Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries: WISE 2012 Challenge - T1: Performance Track Scalability Winner von De Sandes, Edans F. O., Weigang, Li, de Melo, Alba Cristina M. A.

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Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space von de O Sandes, E. F., de Melo, Alba Cristina M. A.

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Topic 11: Multicore and Manycore Programming: Introduction von Derose, Luiz, Treibig, Jan, Jalby, William, de Melo, Alba Cristina M. A., Abramson, David, Donaldson, Alastair, Margalef, Tomàs

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Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines von Teodoro, George, Kurç, Tahsin M, Taveira, Luís F R, Melo, Alba C M A, Gao, Yi, Kong, Jun, Saltz, Joel H

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Rickettsia bellii, Rickettsia amblyommii, and Laguna Negra hantavirus in an Indian reserve in the Brazilian Amazon von de Barros Lopes, Lívia, Guterres, Alexandro, Rozental, Tatiana, Carvalho de Oliveira, Renata, Mares-Guia, Maria Angélica, Fernandes, Jorlan, Figueredo, José Ferreira, Anschau, Inês, de Jesus, Sebastião, V Almeida, Ana Beatriz M, Cristina da Silva, Valéria, Gomes de Melo Via, Alba Valéria, Bonvicino, Cibele Rodrigues, D’Andrea, Paulo Sérgio, Barreira, Jairo Dias, Sampaio de Lemos, Elba Regina

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Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations von Boukerche, Azzedine, de Melo, Alba Cristina Magalhaes Alves, Ayala-Rincon, Mauricio, Santana, Thomas M.

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ANDALIES project: consumption, offer and promotion of healthy eating habits within secondary schools in Andalusia von González Rodríguez, Angustias, García Padilla, Francisca M, Martos Cerezuela, Ildefonso, Silvano Arranz, Agustina, Fernández Lao, Isabel

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Executing a biological sequence comparison application on a federated cloud environment von Leite, A. F., de Melo, A. C. M. A.

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Method to balance the communication among multi-agents in real time traffic synchronization von LI WEIGANG, PINHEIRO DIB, Marcos Vinicius, DE MELO, Alba Cristina

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CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters von De Sandes, Edans, Miranda Álamo, Guillermo, De Melo, Alba Cristina Magalhaes Alves, Martorell Bofill, Xavier, Ayguadé Parra, Eduard

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A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome von Menegói, Guilherme, Raiol, Tainá, de Araújo Oliveira, João Victor, de Oliveira Sandes, Edans Flávius, de Melo, Alba Cristina Magalhães Alves, Maranhão, Andréa Queiroz, Silva-Pereira, Ildinete, Bocca, Anamélia Lorenzetti, Junqueira-Kipnis, Ana Paula, Walter, Maria Emília M. T., Kipnis, André, de Macedo Brígido, Marcelo

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Parallel Simulated Annealing for Fragment Based Sequence Alignment von Correa, J. M., de Melo, A. C. M. A., Jacobi, R. P., Boukerche, A.

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An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN von Boukerche, Azzedine, Correa, Jan Mendonca, de Melo, Alba Cristina Magalhaes Alves, Jacobi, Ricardo Pezzuol, Rocha, Adson Ferreira

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User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid von Guimaraes, F. P., de Melo, A. C. M. A.

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Parallel strategies for local biological sequence alignment in a cluster of workstations von Boukerche, A., de Melo, A.C.M.A., Ayala-Rincon, M.

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