Comparison of SP142 and 22C3 PD-L1 assays in a population-based cohort of triple-negative breast cancer patients in the context of their clinically established scoring algorithms von Sigurjonsdottir, Gudbjörg, De Marchi, Tommaso, Ehinger, Anna, Hartman, Johan, Bosch, Ana, Staaf, Johan, Killander, Fredrika, Niméus, Emma

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Proteomic profiling reveals that ESR1 mutations enhance cyclin-dependent kinase signaling von De Marchi, Tommaso, Lai, Chun-Fui, Simmons, Georgia M., Goldsbrough, Isabella, Harrod, Alison, Lam, Thai, Buluwela, Lakjaya, Kjellström, Sven, Brueffer, Christian, Saal, Lao H., Malmström, Johan, Ali, Simak, Niméus, Emma

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Low levels of WRAP53 predict decreased efficacy of radiotherapy and are prognostic for local recurrence and death from breast cancer: a long-term follow-up of the SweBCG91RT random... von Egelberg, Moa, De Marchi, Tommaso, Pekar, Gyula, Tran, Lena, Bendahl, Pär-Ola, Tullberg, Axel Stenmark, Holmberg, Erik, Karlsson, Per, Farnebo, Marianne, Killander, Fredrika, Nimeús, Emma

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Comparative Proteome Analysis Revealing an 11-Protein Signature for Aggressive Triple-Negative Breast Cancer von NING QING LIU, STINGL, Christoph, MANGIA, Anita, PARADISO, Angelo, DIRIX, Luc Y, VAN LAERE, Steven J, LUIDER, Theo M, MARTENS, John W. M, FOEKENS, John A, UMAR, Arzu, LOOK, Maxime P, SMID, Marcel, BRAAKMAN, René B. H, DE MARCHI, Tommaso, SIEUWERTS, Anieta M, SPAN, Paul N, SWEEP, Fred C. G. J, LINDERHOLM, Barbro K

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Phosphoserine aminotransferase 1 is associated to poor outcome on tamoxifen therapy in recurrent breast cancer von De Marchi, Tommaso, Timmermans, Mieke A., Sieuwerts, Anieta M., Smid, Marcel, Look, Maxime P., Grebenchtchikov, Nicolai, Sweep, Fred C. G. J., Smits, Jan G., Magdolen, Viktor, van Deurzen, Carolien H. M., Foekens, John A., Umar, Arzu, Martens, John W.

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Histone lysine demethylase inhibition reprograms prostate cancer metabolism and mechanics von Chianese, Ugo, Papulino, Chiara, Passaro, Eugenia, Evers, Tom MJ, Babaei, Mehrad, Toraldo, Antonella, De Marchi, Tommaso, Niméus, Emma, Carafa, Vincenzo, Nicoletti, Maria Maddalena, Del Gaudio, Nunzio, Iaccarino, Nunzia, Randazzo, Antonio, Rotili, Dante, Mai, Antonello, Cappabianca, Salvatore, Mashaghi, Alireza, Ciardiello, Fortunato, Altucci, Lucia, Benedetti, Rosaria

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Proteogenomics decodes the evolution of human ipsilateral breast cancer von De Marchi, Tommaso, Pyl, Paul Theodor, Sjöström, Martin, Reinsbach, Susanne Erika, DiLorenzo, Sebastian, Nystedt, Björn, Tran, Lena, Pekar, Gyula, Wärnberg, Fredrik, Fredriksson, Irma, Malmström, Per, Fernö, Mårten, Malmström, Lars, Malmstöm, Johan, Niméus, Emma

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Evaluation of alternative prognostic thresholds for SP142 and 22C3 immunohistochemical PD-L1 expression in triple-negative breast cancer: results from a population-based cohort von Sigurjonsdottir, Gudbjörg, De Marchi, Tommaso, Ehinger, Anna, Hartman, Johan, Ullén, Susann, Leandersson, Karin, Bosch, Ana, Staaf, Johan, Killander, Fredrika, Niméus, Emma

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Endocrine therapy resistance in estrogen receptor (ER)-positive breast cancer von De Marchi, Tommaso, Foekens, John A., Umar, Arzu, Martens, John W.M.

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Global proteomic characterization of microdissected estrogen receptor positive breast tumors von De Marchi, Tommaso, Liu, Ning Qing, Sting, Christoph, Smid, Marcel, Tjoa, Mila, Braakman, René B.H., Luider, Theo M., Foekens, John A., Martens, John W.M., Umar, Arzu

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Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance von De Marchi, Tommaso, Pyl, Paul Theodor, Sjöström, Martin, Klasson, Stina, Sartor, Hanna, Tran, Lena, Pekar, Gyula, Malmström, Johan, Malmström, Lars, Niméus, Emma

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The advantage of laser-capture microdissection over whole tissue analysis in proteomic profiling studies von De Marchi, Tommaso, Braakman, Rene B. H., Stingl, Christoph, van Duijn, Martijn M., Smid, Marcel, Foekens, John A., Luider, Theo M., Martens, John W. M., Umar, Arzu

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Inhibition of Histone Demethylases LSD1 and UTX Regulates ERα Signaling in Breast Cancer von Benedetti, Rosaria, Dell'Aversana, Carmela, De Marchi, Tommaso, Rotili, Dante, Liu, Ning Qing, Novakovic, Boris, Boccella, Serena, Di Maro, Salvatore, Cosconati, Sandro, Baldi, Alfonso, Niméus, Emma, Schultz, Johan, Höglund, Urban, Maione, Sabatino, Papulino, Chiara, Chianese, Ugo, Iovino, Francesco, Federico, Antonio, Mai, Antonello, Stunnenberg, Hendrik G, Nebbioso, Angela, Altucci, Lucia

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Regulatory Interplay between miR-181a-5p and Estrogen Receptor Signaling Cascade in Breast Cancer von Benedetti, Rosaria, Papulino, Chiara, Sgueglia, Giulia, Chianese, Ugo, De Marchi, Tommaso, Iovino, Francesco, Rotili, Dante, Mai, Antonello, Niméus, Emma, Dell' Aversana, Carmela, Altucci, Lucia

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Antibody-Based Capture of Target Peptides in Multiple Reaction Monitoring Experiments von De Marchi, Tommaso, Kuhn, Eric, Carr, Steven A., Umar, Arzu

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Quantitative Proteomic Analysis of Microdissected Breast Cancer Tissues: Comparison of Label-Free and SILAC-based Quantification with Shotgun, Directed, and Targeted MS Approaches von Liu, Ning Qing, Dekker, Lennard J. M, Stingl, Christoph, Güzel, Coşkun, De Marchi, Tommaso, Martens, John W. M, Foekens, John A, Luider, Theo M, Umar, Arzu

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Ferritin Heavy Chain in Triple Negative Breast Cancer: A Favorable Prognostic Marker that Relates to a Cluster of Differentiation 8 Positive (CD8+) Effector T-cell Response von Liu, Ning Qing, De Marchi, Tommaso, Timmermans, Annemieke M., Beekhof, Robin, Trapman-Jansen, Anita M.A.C., Foekens, Renée, Look, Maxime P., van Deurzen, Carolien H.M., Span, Paul N., Sweep, Fred C.G.J., Brask, Julie Benedicte, Timmermans-Wielenga, Vera, Debets, Reno, Martens, John W.M., Foekens, John A., Umar, Arzu

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Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera von De Marchi, Tommaso, Kuhn, Erik, Dekker, Lennard J, Stingl, Christoph, Braakman, Rene B. H, Opdam, Mark, Linn, Sabine C, Sweep, Fred C. G. J, Span, Paul N, Luider, Theo M, Foekens, John A, Martens, John W. M, Carr, Steven A, Umar, Arzu

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Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients von Liu, Ning Qing, De Marchi, Tommaso, Timmermans, Annemieke, Trapman-Jansen, Anita M. A. C., Foekens, Renée, Look, Maxime P., Smid, Marcel, van Deurzen, Carolien H. M., Span, Paul N., Sweep, Fred C. G. J., Brask, Julie Benedicte, Timmermans-Wielenga, Vera, Foekens, John A., Martens, John W. M., Umar, Arzu

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A somatic mutation in moesin drives progression into acute myeloid leukemia von Yuan, Ouyang, Ugale, Amol, de Marchi, Tommaso, Anthonydhason, Vimala, Konturek-Ciesla, Anna, Wan, Haixia, Eldeeb, Mohamed, Drabe, Caroline, Jassinskaja, Maria, Hansson, Jenny, Hidalgo, Isabel, Velasco-Hernandez, Talia, Cammenga, Jörg, Magee, Jeffrey A, Niméus, Emma, Bryder, David

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