Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel von Akhtar, Waseem, de Jong, Johann, Pindyurin, Alexey V., Pagie, Ludo, Meuleman, Wouter, de Ridder, Jeroen, Berns, Anton, Wessels, Lodewyk F.A., van Lohuizen, Maarten, van Steensel, Bas

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Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency von Gisler, Santiago, Gonçalves, Joana P., Akhtar, Waseem, de Jong, Johann, Pindyurin, Alexey V., Wessels, Lodewyk F. A., van Lohuizen, Maarten

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Prolonged Ezh2 Depletion in Glioblastoma Causes a Robust Switch in Cell Fate Resulting in Tumor Progression von de Vries, Nienke A., Hulsman, Danielle, Akhtar, Waseem, de Jong, Johann, Miles, Denise C., Blom, Marleen, van Tellingen, Olaf, Jonkers, Jos, van Lohuizen, Maarten

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Deep learning for clustering of multivariate clinical patient trajectories with missing values von de Jong, Johann, Emon, Mohammad Asif, Wu, Ping, Karki, Reagon, Sood, Meemansa, Godard, Patrice, Ahmad, Ashar, Vrooman, Henri, Hofmann-Apitius, Martin, Fröhlich, Holger

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Chromatin landscapes of retroviral and transposon integration profiles von de Jong, Johann, Akhtar, Waseem, Badhai, Jitendra, Rust, Alistair G, Rad, Roland, Hilkens, John, Berns, Anton, van Lohuizen, Maarten, Wessels, Lodewyk F A, de Ridder, Jeroen

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An Explainable Multimodal Neural Network Architecture for Predicting Epilepsy Comorbidities Based on Administrative Claims Data von Linden, Thomas, De Jong, Johann, Lu, Chao, Kiri, Victor, Haeffs, Kathrin, Fröhlich, Holger

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Using TRIP for genome-wide position effect analysis in cultured cells von Akhtar, Waseem, Pindyurin, Alexey V, de Jong, Johann, Pagie, Ludo, ten Hoeve, Jelle, Berns, Anton, Wessels, Lodewyk F A, van Steensel, Bas, van Lohuizen, Maarten

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A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut von Botman, Daniel, Röttinger, Eric, Martindale, Mark Q, de Jong, Johann, Kaandorp, Jaap A

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The small FOXP1 isoform predominantly expressed in activated B cell-like diffuse large B-cell lymphoma and full-length FOXP1 exert similar oncogenic and transcriptional activity in... von van Keimpema, Martine, Grüneberg, Leonie J, Schilder-Tol, Esther J M, Oud, Monique E C M, Beuling, Esther A, Hensbergen, Paul J, de Jong, Johann, Pals, Steven T, Spaargaren, Marcel

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Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development von Botman, Daniel, Jansson, Fredrik, Röttinger, Eric, Martindale, Mark Q, de Jong, Johann, Kaandorp, Jaap A

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Towards realizing the vision of precision medicine: AI based prediction of clinical drug response von de Jong, Johann, Cutcutache, Ioana, Page, Matthew, Elmoufti, Sami, Dilley, Cynthia, Froehlich, Holger, Armstrong, Martin

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Chemical profiling of the genome with anti-cancer drugs defines target specificities von Pang, Baoxu, de Jong, Johann, Qiao, Xiaohang, Wessels, Lodewyk F A, Neefjes, Jacques

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3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes von Babaei, Sepideh, Akhtar, Waseem, de Jong, Johann, Reinders, Marcel, de Ridder, Jeroen

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Dosage-dependent tumor suppression by histone deacetylases 1 and 2 through regulation of c-Myc collaborating genes and p53 function von Heideman, Marinus R., Wilting, Roel H., Yanover, Eva, Velds, Arno, de Jong, Johann, Kerkhoven, Ron M., Jacobs, Heinz, Wessels, Lodewyk F., Dannenberg, Jan-Hermen

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A cell-based model of Nematostella vectensis gastrulation including bottle cell formation, invagination and zippering von Tamulonis, Carlos, Postma, Marten, Marlow, Heather Q., Magie, Craig R., de Jong, Johann, Kaandorp, Jaap

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Predicting seizure recurrence after an initial seizure-like episode from routine clinical notes using large language models: a retrospective cohort study von Beaulieu-Jones, Brett K, Villamar, Mauricio F, Scordis, Phil, Bartmann, Ana Paula, Ali, Waqar, Wissel, Benjamin D, Alsentzer, Emily, de Jong, Johann, Patra, Arijit, Kohane, Isaac

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TRIP through the chromatin: A high throughput exploration of enhancer regulatory landscapes von Pindyurin, Alexey V., de Jong, Johann, Akhtar, Waseem

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Corrigendum: using TRIP for genome-wide position effect analysis in cultured cells von Akhtar, Waseem, Pindyurin, Alexey V, de Jong, Johann, Pagie, Ludo, Ten Hoeve, Jelle, Berns, Anton, Wessels, Lodewyk F A, van Steensel, Bas, van Lohuizen, Maarten

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Erratum: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells von Akhtar, Waseem, Pindyurin, Alexey V, de Jong, Johann, Pagie, Ludo, ten Hoeve, Jelle, Berns, Anton, Wessels, Lodewyk F A, van Steensel, Bas, van Lohuizen, Maarten

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Correction: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells von Akhtar, Waseem, Pindyurin, Alexey V, de Jong, Johann, Pagie, Ludo, ten Hoeve, Jelle, Berns, Anton, Wessels, Lodewyk F A, van Steensel, Bas, van Lohuizen, Maarten

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