Genomics and pathotypes of the many faces of Escherichia coli von Geurtsen, Jeroen, de Been, Mark, Weerdenburg, Eveline, Zomer, Aldert, McNally, Alan, Poolman, Jan

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Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium von de Been, Mark, Pinholt, Mette, Top, Janetta, Bletz, Stefan, Mellmann, Alexander, van Schaik, Willem, Brouwer, Ellen, Rogers, Malbert, Kraat, Yvette, Bonten, Marc, Corander, Jukka, Westh, Henrik, Harmsen, Dag, Willems, Rob J L

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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults von Kolmeder, Carolin A, Salojärvi, Jarkko, Ritari, Jarmo, de Been, Mark, Raes, Jeroen, Falony, Gwen, Vieira-Silva, Sara, Kekkonen, Riina A, Corthals, Garry L, Palva, Airi, Salonen, Anne, de Vos, Willem M

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Genome-Wide Detection and Analysis of Cell Wall-Bound Proteins with LPxTG-Like Sorting Motifs von BOEKHORST, Jos, DE BEEN, Mark W. H. J, KLEEREBEZEM, Michiel, SIEZEN, Roland J

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Within-Host Evolution of the Dutch High-Prevalent Pseudomonas aeruginosa Clone ST406 during Chronic Colonization of a Patient with Cystic Fibrosis von van Mansfeld, Rosa, de Been, Mark, Paganelli, Fernanda, Yang, Lei, Bonten, Marc, Willems, Rob

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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages von de Been, Mark, Lanza, Val F, de Toro, María, Scharringa, Jelle, Dohmen, Wietske, Du, Yu, Hu, Juan, Lei, Ying, Li, Ning, Tooming-Klunderud, Ave, Heederik, Dick J J, Fluit, Ad C, Bonten, Marc J M, Willems, Rob J L, de la Cruz, Fernando, van Schaik, Willem

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Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions von Kolmeder, Carolin A, de Been, Mark, Nikkilä, Janne, Ritamo, Ilja, Mättö, Jaana, Valmu, Leena, Salojärvi, Jarkko, Palva, Airi, Salonen, Anne, de Vos, Willem M

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RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum von Zhang, Xinglin, de Maat, Vincent, Guzmán Prieto, Ana M, Prajsnar, Tomasz K, Bayjanov, Jumamurat R, de Been, Mark, Rogers, Malbert R C, Bonten, Marc J M, Mesnage, Stéphane, Willems, Rob J L, van Schaik, Willem

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An iterative workflow for mining the human intestinal metaproteome von Rooijers, K, Kolmeder, C, Juste, C, Doré, J, Been, M. de, Boeren, S, Galan, P, Vos, W.M. de, Schaap, P.J, Beauvallet, C

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A multicomponent sugar phosphate sensor system specifically induced in Bacillus cereus during infection of the insect gut von Song, Fuping, Peng, Qi, Brillard, Julien, Buisson, Christophe, Been, Mark, Abee, Tjakko, Broussolle, Véronique, Huang, Dafang, Zhang, Jie, Lereclus, Didier, Nielsen‐LeRoux, Christina

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Directional gene flow and ecological separation in Yersinia enterocolitica von Reuter, Sandra, Corander, Jukka, de Been, Mark, Harris, Simon, Cheng, Lu, Hall, Miquette, Thomson, Nicholas R, McNally, Alan

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Generation of a 3D indexed Petunia insertion database for reverse genetics von Vandenbussche, Michiel, Janssen, Antoine, Zethof, Jan, Van Orsouw, Nathalie, Peters, Janny, Van Eijk, Michiel J.T., Rijpkema, Anneke S., Schneiders, Harrie, Santhanam, Parthasarathy, De Been, Mark, Van Tunen, Arjen, Gerats, Tom

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Effects of selective digestive decontamination (SDD) on the gut resistome von Buelow, Elena, Gonzalez, Teresita Bello, Versluis, Dennis, Oostdijk, Evelien A N, Ogilvie, Lesley A, van Mourik, Maaike S M, Oosterink, Els, van Passel, Mark W J, Smidt, Hauke, D'Andrea, Marco Maria, de Been, Mark, Jones, Brian V, Willems, Rob J L, Bonten, Marc J M, van Schaik, Willem

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Silencing of the pollen-specific gene NTP303 and its family members in tobacco affects in vivo pollen tube growth and results in male sterile plants von Groot, P. de, Weterings, K, Been, M. de, Wittink, F, Hulzink, R, Custers, J, Herpen, M. van, Wullems, G

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Genomics and pathotypes of the many faces of Escherichia coli von Geurtsen, Jeroen, de Been, Mark, Weerdenburg, Eveline, Zomer, Aldert, McNally, Alan, Poolman, Jan

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Identification of a Genetic Determinant in Clinical Enterococcus faecium Strains That Contributes to Intestinal Colonization During Antibiotic Treatment von Zhang, Xinglin, Top, Janetta, de Been, Mark, Bierschenk, Damien, Rogers, Malbert, Leendertse, Masja, Bonten, Marc J. M., van der Poll, Tom, Willems, Rob J. L., van Schaik, Willem

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The salivary scavenger and agglutinin in early life: diverse roles in amniotic fluid and in the infant intestine von Reichhardt, Martin Parnov, Jarva, Hanna, de Been, Mark, Rodriguez, Juan Miguel, Jimenez Quintana, Esther, Loimaranta, Vuokko, de Vos, Willem Meindert, Meri, Seppo

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Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium von de Been, Mark, van Schaik, Willem, Cheng, Lu, Corander, Jukka, Willems, Rob J

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Sequence-Based Epidemiology of an OXA-48 Plasmid during a Hospital Outbreak von Hidalgo, Laura, de Been, Mark, Rogers, Malbert R. C., Schürch, Anita C., Scharringa, Jelle, van der Zee, Anneke, Bonten, Marc J. M., Fluit, Ad C.

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From transcriptional landscapes to the identification of biomarkers for robustness von Abee, Tjakko, Wels, Michiel, de Been, Mark, den Besten, Heidy

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