Detection of allele-specific expression in spatial transcriptomics with spASE von Zou, Luli S, Cable, Dylan M, Barrera-Lopez, Irving A, Zhao, Tongtong, Murray, Evan, Aryee, Martin J, Chen, Fei, Irizarry, Rafael A

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Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures von Rai, Vivek, Quang, Daniel X., Erdos, Michael R., Cusanovich, Darren A., Daza, Riza M., Narisu, Narisu, Zou, Luli S., Didion, John P., Guan, Yuanfang, Shendure, Jay, Parker, Stephen C.J., Collins, Francis S.

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BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues von Zou, Luli S, Erdos, Michael R, Taylor, D Leland, Chines, Peter S, Varshney, Arushi, Parker, Stephen C J, Collins, Francis S, Didion, John P

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Cell type-specific inference of differential expression in spatial transcriptomics von Cable, Dylan M., Murray, Evan, Shanmugam, Vignesh, Zhang, Simon, Zou, Luli S., Diao, Michael, Chen, Haiqi, Macosko, Evan Z., Irizarry, Rafael A., Chen, Fei

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Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer von Johnstone, Sarah E., Reyes, Alejandro, Qi, Yifeng, Adriaens, Carmen, Hegazi, Esmat, Pelka, Karin, Chen, Jonathan H., Zou, Luli S., Drier, Yotam, Hecht, Vivian, Shoresh, Noam, Selig, Martin K., Lareau, Caleb A., Iyer, Sowmya, Nguyen, Son C., Joyce, Eric F., Hacohen, Nir, Irizarry, Rafael A., Zhang, Bin, Aryee, Martin J., Bernstein, Bradley E.

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Augmenting and directing long-range CRISPR-mediated activation in human cells von Tak, Y. Esther, Horng, Joy E., Perry, Nicholas T., Schultz, Hayley T., Iyer, Sowmya, Yao, Qiuming, Zou, Luli S., Aryee, Martin J., Pinello, Luca, Joung, J. Keith

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Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates von Sievers, Chelsie K, Zou, Luli S, Pickhardt, Perry J, Matkowskyj, Kristina A, Albrecht, Dawn M, Clipson, Linda, Bacher, Jeffery W, Pooler, B Dustin, Moawad, Fouad J, Cash, Brooks D, Reichelderfer, Mark, Vo, Tien N, Newton, Michael A, Larget, Bret R, Halberg, Richard B

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Author Correction: Augmenting and directing long-range CRISPR-mediated activation in human cells von Tak, Y. Esther, Horng, Joy E., Perry, Nicholas T., Schultz, Hayley T., Iyer, Sowmya, Yao, Qiuming, Zou, Luli S., Aryee, Martin J., Pinello, Luca, Joung, J. Keith

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Augmenting and Directing Robust, Long-Range CRISPR-Mediated Activation in Human Cells von Tak, Y. Esther, Horng, Joy E, Perry, Nicholas T, Schultz, Hayley, Iyer, Sowmya, Yao, Qiuming, Zou, Luli S, Aryee, Martin, Pinello, Luca, Joung, Keith

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Statistical and computational methods for spatial and regulatory genomics von Zou, Luli S

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Additional file 4 of Detection of allele-specific expression in spatial transcriptomics with spASE von Zou, Luli S., Cable, Dylan M., Barrera-Lopez, Irving A., Zhao, Tongtong, Murray, Evan, Aryee, Martin J., Chen, Fei, Irizarry, Rafael A.

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Additional file 3 of Detection of allele-specific expression in spatial transcriptomics with spASE von Zou, Luli S., Cable, Dylan M., Barrera-Lopez, Irving A., Zhao, Tongtong, Murray, Evan, Aryee, Martin J., Chen, Fei, Irizarry, Rafael A.

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Additional file 5 of Detection of allele-specific expression in spatial transcriptomics with spASE von Zou, Luli S., Cable, Dylan M., Barrera-Lopez, Irving A., Zhao, Tongtong, Murray, Evan, Aryee, Martin J., Chen, Fei, Irizarry, Rafael A.

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Additional file 2 of Detection of allele-specific expression in spatial transcriptomics with spASE von Zou, Luli S., Cable, Dylan M., Barrera-Lopez, Irving A., Zhao, Tongtong, Murray, Evan, Aryee, Martin J., Chen, Fei, Irizarry, Rafael A.

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The on-site Rescuing Conservation of Yanggong’s Tomb Mural in Tang Dynasty von Zou, Luli, Zhou, Hua

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Two Short-Wave UV Antimony(III) Sulfates Exhibiting Large Birefringence von Lan, Yang, Luo, Han, Wang, Luli, Huang, Ling, Cao, Liling, Dong, Xuehua, Zou, Guohong

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KSb2F7·2KNO3: Unveiling the peak birefringence in inorganic antimony oxysalts von Wang, Qin, Luo, Han, Wang, Luli, Huang, Ling, Cao, Liling, Dong, Xuehua, Zou, Guohong

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Disruption of cellular plasticity by repeat RNAs in human pancreatic cancer von You, Eunae, Danaher, Patrick, Lu, Chenyue, Sun, Siyu, Zou, Luli, Phillips, Ildiko E, Rojas, Alexandra S, Ho, Natalie I, Song, Yuhui, Raabe, Michael J, Xu, Katherine H, Richieri, Peter M, Li, Hao, Aston, Natalie, Porter, Rebecca L, Patel, Bidish K, Nieman, Linda T, Schurman, Nathan, Hudson, Briana M, North, Khrystyna, Church, Sarah E, Deshpande, Vikram, Liss, Andrew S, Kim, Tae K, Cui, Yi, Kim, Youngmi, Greenbaum, Benjamin D, Aryee, Martin J, Ting, David T

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Abstract C038: Repeat RNA dysregulation of cellular states in the pancreatic cancer microenvironment von You, Eunae, Zou, Luli, Danaher, Patrick, Phillips, Ildiko E., Raabe, Michael J., Patel, Bidish, Pankaj, Amaya, North, Khrystyna, Kim, Sean, Kim, Youngmi, Aryee, Martin, Ting, David T.

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Abstract 4799: Variation in mutational landscape among small colonic polyps with differential growth rates von Sievers, Chelsie K., Pickhardt, Perry J., Matkowskyj, Kristina, Albrecht, Dawn, Zou, Luli, Kim, David, Lubner, Meghan, Reichelderfer, Mark, Halberg, Richard

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