Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes von Zhou, Wanding, Laird, Peter W, Shen, Hui

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DNA methylation enables transposable element-driven genome expansion von Zhou, Wanding, Liang, Gangning, Molloy, Peter L., Jones, Peter A.

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A mammalian methylation array for profiling methylation levels at conserved sequences von Arneson, Adriana, Haghani, Amin, Thompson, Michael J., Pellegrini, Matteo, Kwon, Soo Bin, Vu, Ha, Maciejewski, Emily, Yao, Mingjia, Li, Caesar Z., Lu, Ake T., Morselli, Marco, Rubbi, Liudmilla, Barnes, Bret, Hansen, Kasper D., Zhou, Wanding, Breeze, Charles E., Ernst, Jason, Horvath, Steve

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DNA methylation loss in late-replicating domains is linked to mitotic cell division von Zhou, Wanding, Dinh, Huy Q., Ramjan, Zachary, Weisenberger, Daniel J., Nicolet, Charles M., Shen, Hui, Laird, Peter W., Berman, Benjamin P.

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A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing von Ahsan, Mian Umair, Gouru, Anagha, Chan, Joe, Zhou, Wanding, Wang, Kai

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The chromatin accessibility landscape of primary human cancers von Corces, M Ryan, Granja, Jeffrey M, Shams, Shadi, Louie, Bryan H, Seoane, Jose A, Zhou, Wanding, Silva, Tiago C, Groeneveld, Clarice, Wong, Christopher K, Cho, Seung Woo, Satpathy, Ansuman T, Mumbach, Maxwell R, Hoadley, Katherine A, Robertson, A Gordon, Sheffield, Nathan C, Felau, Ina, Castro, Mauro A A, Berman, Benjamin P, Staudt, Louis M, Zenklusen, Jean C, Laird, Peter W, Curtis, Christina, Greenleaf, William J, Chang, Howard Y

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Computational Methods for Single-cell DNA Methylome Analysis von Iqbal, Waleed, Zhou, Wanding

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Vitamin C increases viral mimicry induced by 5-aza-2′-deoxycytidine von Liu, Minmin, Ohtani, Hitoshi, Zhou, Wanding, Ørskov, Andreas Due, Charlet, Jessica, Zhang, Yang W., Shen, Hui, Baylin, Stephen B., Liang, Gangning, Grønbæk, Kirsten, Jones, Peter A.

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Dual Inhibition of DNA and Histone Methyltransferases Increases Viral Mimicry in Ovarian Cancer Cells von Liu, Minmin, Thomas, Stacey L, DeWitt, Ashley K, Zhou, Wanding, Madaj, Zachary B, Ohtani, Hitoshi, Baylin, Stephen B, Liang, Gangning, Jones, Peter A

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EHMT2 suppresses the variation of transcriptional switches in the mouse embryo von Zeng, Tie-Bo, Pierce, Nicholas, Liao, Ji, Singh, Purnima, Lau, Kin, Zhou, Wanding, Szabo, Piroska E.

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Characterizing DNA methylation signatures of retinoblastoma using aqueous humor liquid biopsy von Li, Hong-Tao, Xu, Liya, Weisenberger, Daniel J., Li, Meng, Zhou, Wanding, Peng, Chen-Ching, Stachelek, Kevin, Cobrinik, David, Liang, Gangning, Berry, Jesse L.

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Properties of metabolic graphs: biological organization or representation artifacts? von Zhou, Wanding, Nakhleh, Luay

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The genomic landscape of tuberous sclerosis complex von Martin, Katie R., Zhou, Wanding, Bowman, Megan J., Shih, Juliann, Au, Kit Sing, Dittenhafer-Reed, Kristin E., Sisson, Kellie A., Koeman, Julie, Weisenberger, Daniel J., Cottingham, Sandra L., DeRoos, Steven T., Devinsky, Orrin, Winn, Mary E., Cherniack, Andrew D., Shen, Hui, Northrup, Hope, Krueger, Darcy A., MacKeigan, Jeffrey P.

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Large DNA Methylation Nadirs Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity von Zhang, Xiaotian, Jeong, Mira, Huang, Xingfan, Wang, Xue Qing, Wang, Xinyu, Zhou, Wanding, Shamim, Muhammad S., Gore, Haley, Himadewi, Pamela, Liu, Yushuai, Bochkov, Ivan D., Reyes, Jaime, Doty, Madison, Huang, Yung-Hsin, Jung, Haiyoung, Heikamp, Emily, Aiden, Aviva Presser, Li, Wei, Su, Jianzhong, Aiden, Erez Lieberman, Goodell, Margaret A.

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PyComplexHeatmap: A Python package to visualize multimodal genomics data von Ding, Wubin, Goldberg, David, Zhou, Wanding

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Activation of a Subset of Evolutionarily Young Transposable Elements and Innate Immunity Are Linked to Clinical Responses to 5-Azacytidine von Ohtani, Hitoshi, Orskov, Andreas D., Helbo, Alexandra S., Gillberg, Linn, Liu, Minmin, Zhou, Wanding, Ungerstedt, Johanna, Hellstrom-Lindberg, Eva, Sun, Weili, Liang, Gangning, Jones, Peter A., Gronbaek, Kirsten

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PRC2-AgeIndex as a universal biomarker of aging and rejuvenation von Moqri, Mahdi, Cipriano, Andrea, Simpson, Daniel J., Rasouli, Sajede, Murty, Tara, de Jong, Tineke Anna, Nachun, Daniel, de Sena Brandine, Guilherme, Ying, Kejun, Tarkhov, Andrei, Aberg, Karolina A., van den Oord, Edwin, Zhou, Wanding, Smith, Andrew, Mackall, Crystal, Gladyshev, Vadim N., Horvath, Steve, Snyder, Michael P., Sebastiano, Vittorio

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TET1 displays catalytic and non-catalytic functions in the adult mouse cortex von Foong, Yee Hoon, Caldwell, Blake, Thorvaldsen, Joanne L, Krapp, Christopher, Mesaros, Clementina A, Zhou, Wanding, Kohli, Rahul M, Bartolomei, Marisa S

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A B-cell developmental gene regulatory network is activated in infant AML von Bolouri, Hamid, Ries, Rhonda, Pardo, Laura, Hylkema, Tiffany, Zhou, Wanding, Smith, Jenny L., Leonti, Amanda, Loken, Michael, Farrar, Jason E., Triche, Timothy J., Meshinchi, Soheil

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On correlative and causal links of replicative epimutations von Zhou, Wanding, Reizel, Yitzhak

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