Chemotherapy induces dynamic immune responses in breast cancers that impact treatment outcome von Park, Yeon Hee, Lal, Samir, Lee, Jeong Eon, Choi, Yoon-La, Wen, Ji, Ram, Sripad, Ding, Ying, Lee, Soo-Hyeon, Powell, Eric, Lee, Se Kyung, Yu, Jong Han, Ching, Keith A., Nam, Jae-Yong, Kim, Seok Won, Nam, Seok Jin, Kim, Ji-Yeon, Cho, Soo Youn, Park, Seri, Kim, Jinho, Hwang, Soohyn, Kim, Yu Jin, Bonato, Vinicius, Fernandez, Diane, Deng, Shibing, Wang, Shuoguo, Shin, Hyuntae, Kang, Eun-Suk, Park, Woong-Yang, Rejto, Paul A., Bienkowska, Jadwiga, Kan, Zhengyan

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Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer von Chung, Woosung, Eum, Hye Hyeon, Lee, Hae-Ock, Lee, Kyung-Min, Lee, Han-Byoel, Kim, Kyu-Tae, Ryu, Han Suk, Kim, Sangmin, Lee, Jeong Eon, Park, Yeon Hee, Kan, Zhengyan, Han, Wonshik, Park, Woong-Yang

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Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer von Wang, Kai, Kan, Junsuo, Yuen, Siu Tsan, Shi, Stephanie T, Chu, Kent Man, Law, Simon, Chan, Tsun Leung, Kan, Zhengyan, Chan, Annie S Y, Tsui, Wai Yin, Lee, Siu Po, Ho, Siu Lun, Chan, Anthony K W, Cheng, Grace H W, Roberts, Peter C, Rejto, Paul A, Gibson, Neil W, Pocalyko, David J, Mao, Mao, Xu, Jiangchun, Leung, Suet Yi

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Multi-omics profiling of younger Asian breast cancers reveals distinctive molecular signatures von Kan, Zhengyan, Ding, Ying, Kim, Jinho, Jung, Hae Hyun, Chung, Woosung, Lal, Samir, Cho, Soonweng, Fernandez-Banet, Julio, Lee, Se Kyung, Kim, Seok Won, Lee, Jeong Eon, Choi, Yoon-La, Deng, Shibing, Kim, Ji-Yeon, Ahn, Jin Seok, Sha, Ying, Mu, Xinmeng Jasmine, Nam, Jae-Yong, Im, Young-Hyuck, Lee, Soohyeon, Park, Woong-Yang, Nam, Seok Jin, Park, Yeon Hee

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Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma von Sung, Wing-Kin, Zheng, Hancheng, Li, Shuyu, Chen, Ronghua, Liu, Xiao, Li, Yingrui, Lee, Nikki P, Lee, Wah H, Ariyaratne, Pramila N, Tennakoon, Chandana, Mulawadi, Fabianus H, Wong, Kwong F, Liu, Angela M, Poon, Ronnie T, Fan, Sheung Tat, Chan, Kwong L, Gong, Zhuolin, Hu, Yujie, Lin, Zhao, Wang, Guan, Zhang, Qinghui, Barber, Thomas D, Chou, Wen-Chi, Aggarwal, Amit, Hao, Ke, Zhou, Wei, Zhang, Chunsheng, Hardwick, James, Buser, Carolyn, Xu, Jiangchun, Kan, Zhengyan, Dai, Hongyue, Mao, Mao, Reinhard, Christoph, Wang, Jun, Luk, John M

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Smoothened Mutation Confers Resistance to a Hedgehog Pathway Inhibitor in Medulloblastoma von Yauch, Robert L., Dijkgraaf, Gerrit J. P., Alicke, Bruno, Januario, Thomas, Ahn, Christina P., Holcomb, Thomas, Pujara, Kanan, Stinson, Jeremy, Callahan, Christopher A., Tang, Tracy, Bazan, J. Fernando, Kan, Zhengyan, Seshagiri, Somasekar, Hann, Christine L., Gould, Stephen E., Low, Jennifer A., Rudin, Charles M., de Sauvage, Frederic J.

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Diverse somatic mutation patterns and pathway alterations in human cancers von Kan, Zhengyan, Jaiswal, Bijay S., Stinson, Jeremy, Janakiraman, Vasantharajan, Bhatt, Deepali, Stern, Howard M., Yue, Peng, Haverty, Peter M., Bourgon, Richard, Zheng, Jianbiao, Moorhead, Martin, Chaudhuri, Subhra, Tomsho, Lynn P., Peters, Brock A., Pujara, Kanan, Cordes, Shaun, Davis, David P., Carlton, Victoria E. H., Yuan, Wenlin, Li, Li, Wang, Weiru, Eigenbrot, Charles, Kaminker, Joshua S., Eberhard, David A., Waring, Paul, Schuster, Stephan C., Modrusan, Zora, Zhang, Zemin, Stokoe, David, de Sauvage, Frederic J., Faham, Malek, Seshagiri, Somasekar

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Immune gene expression profiling reveals heterogeneity in luminal breast tumors von Zhu, Bin, Tse, Lap Ah, Wang, Difei, Koka, Hela, Zhang, Tongwu, Abubakar, Mustapha, Lee, Priscilla, Wang, Feng, Wu, Cherry, Tsang, Koon Ho, Chan, Wing-Cheong, Law, Sze Hong, Li, Mengjie, Li, Wentao, Wu, Suyang, Liu, Zhiguang, Huang, Bixia, Zhang, Han, Tang, Eric, Kan, Zhengyan, Lee, Soohyeon, Park, Yeon Hee, Nam, Seok Jin, Wang, Mingyi, Sun, Xuezheng, Jones, Kristine, Zhu, Bin, Hutchinson, Amy, Hicks, Belynda, Prokunina-Olsson, Ludmila, Shi, Jianxin, Garcia-Closas, Montserrat, Chanock, Stephen, Yang, Xiaohong R

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Comprehensive Characterization of Oncogenic Drivers in Asian Lung Adenocarcinoma von Li, Shiyong, Choi, Yoon-La, Gong, Zhuolin, Liu, Xiao, Lira, Maruja, Kan, Zhengyan, Oh, Ensel, Wang, Jian, Ting, Jason C., Ye, Xiangsheng, Reinhart, Christoph, Liu, Xiaoqiao, Pei, Yunfei, Zhou, Wei, Chen, Ronghua, Fu, Shijun, Jin, Gang, Jiang, Awei, Fernandez, Julio, Hardwick, James, Kang, Min Woong, I, Hoseok, Zheng, Hancheng, Kim, Jhingook, Mao, Mao

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Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples von Nacu, Serban, Yuan, Wenlin, Kan, Zhengyan, Bhatt, Deepali, Rivers, Celina Sanchez, Stinson, Jeremy, Peters, Brock A, Modrusan, Zora, Jung, Kenneth, Seshagiri, Somasekar, Wu, Thomas D

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Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays von Johnson, Jason M., Castle, John, Garrett-Engele, Philip, Kan, Zhengyan, Loerch, Patrick M., Armour, Christopher D., Santos, Ralph, Schadt, Eric E., Stoughton, Roland, Shoemaker, Daniel D.

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Longitudinal multi-omics study of palbociclib resistance in HR-positive/HER2-negative metastatic breast cancer von Park, Yeon Hee, Im, Seock-Ah, Park, Kyunghee, Wen, Ji, Lee, Kyung-Hun, Choi, Yoon-La, Lee, Won-Chul, Min, Ahrum, Bonato, Vinicius, Park, Seri, Ram, Sripad, Lee, Dae-Won, Kim, Ji-Yeon, Lee, Su Kyeong, Lee, Won-Woo, Lee, Jisook, Kim, Miso, Kim, Hyun Seon, Weinrich, Scott L, Ryu, Han Suk, Kim, Tae Yong, Dann, Stephen, Kim, Yu-Jin, Fernandez, Diane R, Koh, Jiwon, Wang, Shuoguo, Park, Song Yi, Deng, Shibing, Powell, Eric, Ravi, Rupesh Kanchi, Bienkowska, Jadwiga, Rejto, Paul A, Park, Woong-Yang, Kan, Zhengyan

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Decoding complex patterns of genomic rearrangement in hepatocellular carcinoma von Fernandez-Banet, Julio, Lee, Nikki P., Chan, Kin Tak, Gao, Huan, Liu, Xiao, Sung, Wing-Kin, Tan, Winnie, Fan, Sheung Tat, Poon, Ronnie T., Li, Shiyong, Ching, Keith, Rejto, Paul A., Mao, Mao, Kan, Zhengyan

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Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing von Ernst, Andreas, Gfeller, David, Kan, Zhengyan, Seshagiri, Somasekar, Kim, Philip M, Bader, Gary D, Sidhu, Sachdev S

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Selecting for functional alternative splices in ESTs von Kan, Zhengyan, States, David, Gish, Warren

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Gene structure prediction and alternative splicing analysis using genomically aligned ESTs von Kan, Z, Rouchka, E C, Gish, W R, States, D J

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ACC2 is expressed at high levels in human white adipose and has an isoform with a novel N-terminus [corrected] von Castle, John C, Hara, Yoshikazu, Raymond, Christopher K, Garrett-Engele, Philip, Ohwaki, Kenji, Kan, Zhengyan, Kusunoki, Jun, Johnson, Jason M

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Antigen Receptor Engagement Delivers a Stop Signal to Migrating T Lymphocytes von Dustin, Michael L., Bromley, Shannon K., Kan, Zhengyan, Peterson, Daniel A., Unanue, Emil R.

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Abstract 2282: VIP: A system biology platform for cell line centric integrative analysis of molecular and functional genomics data von Fernandez, Julio, Ding, Ying, Kan, Zhengyan

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High-throughput, high-accuracy array-based resequencing von Zheng, Jianbiao, Moorhead, Martin, Weng, Li, Siddiqui, Farooq, Carlton, Victoria E.H, Ireland, James S, Lee, Liana, Peterson, Joseph, Wilkins, Jennifer, Lin, Sean, Kan, Zhengyan, Seshagiri, Somasekar, Davis, Ronald W, Faham, Malek

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