Comprehensive mouse microbiota genome catalog reveals major difference to its human counterpart von Kieser, Silas, Zdobnov, Evgeny M, Trajkovski, Mirko

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BUSCO: Assessing Genomic Data Quality and Beyond von Manni, Mosè, Berkeley, Matthew R., Seppey, Mathieu, Zdobnov, Evgeny M.

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The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell von Junier, Thomas, Zdobnov, Evgeny M.

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BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics von Waterhouse, Robert M, Seppey, Mathieu, Simão, Felipe A, Manni, Mosè, Ioannidis, Panagiotis, Klioutchnikov, Guennadi, Kriventseva, Evgenia V, Zdobnov, Evgeny M

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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs von Kriventseva, Evgenia V, Kuznetsov, Dmitry, Tegenfeldt, Fredrik, Manni, Mosè, Dias, Renata, Simão, Felipe A, Zdobnov, Evgeny M

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ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data von Kieser, Silas, Brown, Joseph, Zdobnov, Evgeny M., Trajkovski, Mirko, McCue, Lee Ann

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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs von Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Kuznetsov, Dmitry, Waterhouse, Robert M, Simão, Felipe A, Ioannidis, Panagiotis, Seppey, Mathieu, Loetscher, Alexis, Kriventseva, Evgenia V

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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs von Waterhouse, Robert M, Tegenfeldt, Fredrik, Li, Jia, Zdobnov, Evgeny M, Kriventseva, Evgenia V

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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software von Kriventseva, Evgenia V, Tegenfeldt, Fredrik, Petty, Tom J, Waterhouse, Robert M, Simão, Felipe A, Pozdnyakov, Igor A, Ioannidis, Panagiotis, Zdobnov, Evgeny M

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A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand von Mikhailova, Alina G, Mikhailova, Alina A, Ushakova, Kristina, Tretiakov, Evgeny O, Iliushchenko, Dmitrii, Shamansky, Victor, Lobanova, Valeria, Kozenkov, Ivan, Efimenko, Bogdan, Yurchenko, Andrey A, Kozenkova, Elena, Zdobnov, Evgeny M, Makeev, Vsevolod, Yurov, Valerian, Tanaka, Masashi, Gostimskaya, Irina, Fleischmann, Zoe, Annis, Sofia, Franco, Melissa, Wasko, Kevin, Denisov, Stepan, Kunz, Wolfram S, Knorre, Dmitry, Mazunin, Ilya, Nikolaev, Sergey, Fellay, Jacques, Reymond, Alexandre, Khrapko, Konstantin, Gunbin, Konstantin, Popadin, Konstantin

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Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection von Cordey, Samuel, Vu, Diem-Lan, Schibler, Manuel, L'Huillier, Arnaud G, Brito, Francisco, Docquier, Mylene, Posfay-Barbe, Klara M, Petty, Thomas J, Turin, Lara, Zdobnov, Evgeny M, Kaiser, Laurent

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A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway von Manni, Mose, Zdobnov, Evgeny M.

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Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram‐staining properties von Rands, Chris M., Brüssow, Harald, Zdobnov, Evgeny M.

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Integration of microRNA miR-122 in hepatic circadian gene expression von Gatfield, David, Le Martelot, Gwendal, Vejnar, Charles E, Gerlach, Daniel, Schaad, Olivier, Fleury-Olela, Fabienne, Ruskeepää, Anna-Liisa, Oresic, Matej, Esau, Christine C, Zdobnov, Evgeny M, Schibler, Ueli

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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 von Waterhouse, Robert M, Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Li, Jia, Kriventseva, Evgenia V

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Evolutionary Dynamics of Immune-Related Genes and Pathways in Disease-Vector Mosquitoes von Waterhouse, Robert M, Kriventseva, Evgenia V, Meister, Stephan, Xi, Zhiyong, Alvarez, Kanwal S, Bartholomay, Lyric C, Barillas-Mury, Carolina, Bian, Guowu, Blandin, Stephanie, Christensen, Bruce M, Dong, Yuemei, Jiang, Haobo, Kanost, Michael R, Koutsos, Anastasios C, Levashina, Elena A, Li, Jianyong, Ligoxygakis, Petros, MacCallum, Robert M, Mayhew, George F, Mendes, Antonio, Michel, Kristin, Osta, Mike A, Paskewitz, Susan, Shin, Sang Woon, Vlachou, Dina, Wang, Lihui, Wei, Weiqi, Zheng, Liangbiao, Zou, Zhen, Severson, David W, Raikhel, Alexander S, Kafatos, Fotis C, Dimopoulos, George, Zdobnov, Evgeny M, Christophides, George K

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BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes von Manni, Mosè, Berkeley, Matthew R, Seppey, Mathieu, Simão, Felipe A, Zdobnov, Evgeny M

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Bacterial, Phytoplankton, and Viral Distributions and Their Biogeochemical Contexts in Meromictic Lake Cadagno Offer Insights into the Proterozoic Ocean Microbial Loop von Saini, Jaspreet S., Hassler, Christel, Cable, Rachel, Fourquez, Marion, Danza, Francesco, Roman, Samuele, Tonolla, Mauro, Storelli, Nicola, Jacquet, Stéphan, Zdobnov, Evgeny M., Duhaime, Melissa B.

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Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function von Dunand-Sauthier, Isabelle, Santiago-Raber, Marie-Laure, Capponi, Leonardo, Vejnar, Charles E., Schaad, Olivier, Irla, Magali, Seguín-Estévez, Queralt, Descombes, Patrick, Zdobnov, Evgeny M., Acha-Orbea, Hans, Reith, Walter

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MiRmap: comprehensive prediction of microRNA target repression strength von Vejnar, Charles E, Zdobnov, Evgeny M

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