The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut von Gregory, Ann C., Zablocki, Olivier, Zayed, Ahmed A., Howell, Allison, Bolduc, Benjamin, Sullivan, Matthew B.

Volltext

Genome-centric view of carbon processing in thawing permafrost von Woodcroft, Ben J., Singleton, Caitlin M., Boyd, Joel A., Evans, Paul N., Emerson, Joanne B., Zayed, Ahmed A. F., Hoelzle, Robert D., Lamberton, Timothy O., McCalley, Carmody K., Hodgkins, Suzanne B., Wilson, Rachel M., Purvine, Samuel O., Nicora, Carrie D., Li, Changsheng, Frolking, Steve, Chanton, Jeffrey P., Crill, Patrick M., Saleska, Scott R., Rich, Virginia I., Tyson, Gene W.

Volltext

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses von Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, Gazitua, M. Consuelo, Vik, Dean, Sullivan, Matthew B., Roux, Simon

Volltext

DRAM for distilling microbial metabolism to automate the curation of microbiome function von Shaffer, Michael, Borton, Mikayla A., McGivern, Bridget B., Zayed, Ahmed A., La Rosa, Sabina Leanti, Solden, Lindsey M., Liu, Pengfei, Narrowe, Adrienne B., Rodriguez-Ramos, Josue, Bolduc, Benjamin, Gazitua, M. Consuelo, Daly, Rebecca A., Smith, Garrett J., Vik, Dean R., Pope, Phil B., Sullivan, Matthew B., Roux, Simon, Wrighton, Kelly C.

Volltext

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome von Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stephane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Bowler, Chris, de Vargas, Colomban, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Karp-Boss, Lee, Karsenti, Eric, Ogata, Hiroyuki, Pesant, Stephane, Speich, Sabrina, Sullivan, Matthew B., Wincker, Patrick, Sunagawa, Shinichi

Volltext

Diversity and ecological footprint of Global Ocean RNA viruses von Dominguez-Huerta, Guillermo, Zayed, Ahmed A, Wainaina, James M, Guo, Jiarong, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Mohssen, Mohamed, Zablocki, Olivier, Pelletier, Eric, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Bowler, Chris, Eveillard, Damien, Guidi, Lionel, Karsenti, Eric, Kuhn, Jens H, Ogata, Hiroyuki, Wincker, Patrick, Culley, Alexander, Chaffron, Samuel, Sullivan, Matthew B

Volltext

Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation von Pratama, Akbar Adjie, Bolduc, Benjamin, Zayed, Ahmed A., Zhong, Zhi-Ping, Guo, Jiarong, Vik, Dean R., Gazitua, Maria Consuelo, Wainaina, James M., Roux, Simon, Sullivan, Matthew B.

Volltext

Long-read powered viral metagenomics in the oligotrophic Sargasso Sea von Warwick-Dugdale, Joanna, Tian, Funing, Michelsen, Michelle L., Cronin, Dylan R., Moore, Karen, Farbos, Audrey, Chittick, Lauren, Bell, Ashley, Zayed, Ahmed A., Buchholz, Holger H., Bolanos, Luis M., Parsons, Rachel J., Allen, Michael J., Sullivan, Matthew B., Temperton, Ben

Volltext

efam: an expanded, metaproteome-supported HMM profile database of viral protein families von Zayed, Ahmed A, Lücking, Dominik, Mohssen, Mohamed, Cronin, Dylan, Bolduc, Ben, Gregory, Ann C, Hargreaves, Katherine R, Piehowski, Paul D, White III, Richard A, Huang, Eric L, Adkins, Joshua N, Roux, Simon, Moraru, Cristina, Sullivan, Matthew B

Volltext

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities von Du, Jingjie, Zayed, Ahmed A., Kigerl, Kristina A., Zane, Kylie, Sullivan, Matthew B., Popovich, Phillip G.

Volltext

Environmental vulnerability of the global ocean epipelagic plankton community interactome von Chaffron, Samuel, Delage, Erwan, Budinich, Marko, Vintache, Damien, Henry, Nicolas, Nef, Charlotte, Ardyna, Mathieu, Zayed, Ahmed A., Junger, Pedro C., Galand, Pierre E., Lovejoy, Connie, Murray, Alison E., Sarmento, Hugo, Acinas, Silvia G., Babin, Marcel, Iudicone, Daniele, Jaillon, Olivier, Karsenti, Eric, Wincker, Patrick, Karp-Boss, Lee, Sullivan, Matthew B., Bowler, Chris, de Vargas, Colomban, Eveillard, Damien

Volltext

Marine DNA Viral Macro- and Microdiversity from Pole to Pole von Gregory, Ann C., Zayed, Ahmed A., Conceição-Neto, Nádia, Temperton, Ben, Bolduc, Ben, Alberti, Adriana, Ardyna, Mathieu, Arkhipova, Ksenia, Carmichael, Margaux, Cruaud, Corinne, Dimier, Céline, Domínguez-Huerta, Guillermo, Ferland, Joannie, Kandels, Stefanie, Liu, Yunxiao, Marec, Claudie, Pesant, Stéphane, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tremblay, Jean-Éric, Vik, Dean, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Bowler, Chris, Culley, Alexander I., de Vargas, Colomban, Dutilh, Bas E., Iudicone, Daniele, Karp-Boss, Lee, Roux, Simon, Sunagawa, Shinichi, Wincker, Patrick, Sullivan, Matthew B.

Volltext

Global Trends in Marine Plankton Diversity across Kingdoms of Life von Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Mick, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie

Volltext

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome von Zayed, Ahmed A, Wainaina, James M, Dominguez-Huerta, Guillermo, Pelletier, Eric, Guo, Jiarong, Mohssen, Mohamed, Tian, Funing, Pratama, Akbar Adjie, Bolduc, Benjamin, Zablocki, Olivier, Cronin, Dylan, Solden, Lindsey, Delage, Erwan, Alberti, Adriana, Aury, Jean-Marc, Carradec, Quentin, da Silva, Corinne, Labadie, Karine, Poulain, Julie, Ruscheweyh, Hans-Joachim, Salazar, Guillem, Shatoff, Elan, Bundschuh, Ralf, Fredrick, Kurt, Kubatko, Laura S, Chaffron, Samuel, Culley, Alexander I, Sunagawa, Shinichi, Kuhn, Jens H, Wincker, Patrick, Sullivan, Matthew B, Acinas, Silvia G, Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Gorsky, Gabriel, Guidi, Lionel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Poulton, Nicole, Pesant, Stéphane, Sardet, Christian, Speich, Sabrinia, Stemmann, Lars, Sullivan, Matthew B, Sungawa, Shinichi, Wincker, Patrick

Volltext

Biosynthetic potential of the global ocean microbiome von Paoli, Lucas, Ruscheweyh, Hans-Joachim, Forneris, Clarissa C., Hubrich, Florian, Kautsar, Satria, Bhushan, Agneya, Lotti, Alessandro, Clayssen, Quentin, Salazar, Guillem, Milanese, Alessio, Carlström, Charlotte I., Papadopoulou, Chrysa, Gehrig, Daniel, Karasikov, Mikhail, Mustafa, Harun, Larralde, Martin, Carroll, Laura M., Sánchez, Pablo, Zayed, Ahmed A., Cronin, Dylan R., Acinas, Silvia G., Bork, Peer, Bowler, Chris, Delmont, Tom O., Gasol, Josep M., Gossert, Alvar D., Kahles, André, Sullivan, Matthew B., Wincker, Patrick, Zeller, Georg, Robinson, Serina L., Piel, Jörn, Sunagawa, Shinichi

Volltext

Phage-specific metabolic reprogramming of virocells von Howard-Varona, Cristina, Lindback, Morgan M., Bastien, G. Eric, Solonenko, Natalie, Zayed, Ahmed A., Jang, HoBin, Andreopoulos, Bill, Brewer, Heather M., Glavina del Rio, Tijana, Adkins, Joshua N., Paul, Subhadeep, Sullivan, Matthew B., Duhaime, Melissa B.

Volltext

Novel integrative elements and genomic plasticity in ocean ecosystems von Hackl, Thomas, Laurenceau, Raphaël, Ankenbrand, Markus J., Bliem, Christina, Cariani, Zev, Thomas, Elaina, Dooley, Keven D., Arellano, Aldo A., Hogle, Shane L., Berube, Paul, Leventhal, Gabriel E., Luo, Elaine, Eppley, John M., Zayed, Ahmed A., Beaulaurier, John, Stepanauskas, Ramunas, Sullivan, Matthew B., DeLong, Edward F., Biller, Steven J., Chisholm, Sallie W.

Volltext

The RNA virosphere: How big and diverse is it? von Dominguez‐Huerta, Guillermo, Wainaina, James M., Zayed, Ahmed A., Culley, Alexander I., Kuhn, Jens H., Sullivan, Matthew B.

Volltext

Genome‐resolved viral ecology in a marine oxygen minimum zone von Vik, Dean, Gazitúa, Maria Consuelo, Sun, Christine L., Zayed, Ahmed A., Aldunate, Montserrat, Mulholland, Margaret R., Ulloa, Osvaldo, Sullivan, Matthew B.

Volltext

Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient von Sun, Christine L., Pratama, Akbar Adjie, Gazitúa, Maria Consuelo, Cronin, Dylan, McGivern, Bridget B., Wainaina, James M., Vik, Dean R., Zayed, Ahmed A., Bolduc, Benjamin, Wrighton, Kelly C., Rich, Virginia I., Sullivan, Matthew B.

Volltext