Identification of flux trade-offs in metabolic networks von Hashemi, Seirana, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism von Pries, Christopher, Razaghi-Moghadam, Zahra, Kopka, Joachim, Nikoloski, Zoran

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Reaction lumping in metabolic networks for application with thermodynamic metabolic flux analysis von Seep, Lea, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level von Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony von Hashemi, Seirana, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Data integration across conditions improves turnover number estimates and metabolic predictions von Wendering, Philipp, Arend, Marius, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes von Razaghi-Moghadam, Zahra, Soleymani Babadi, Fayaz, Nikoloski, Zoran

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Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data von Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Characterization of effects of genetic variants via genome-scale metabolic modelling von Tong, Hao, Küken, Anika, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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CAMIRADA: Cancer microRNA association discovery algorithm, a case study on breast cancer von Shamsizadeh, Sepideh, Goliaei, Sama, Razaghi Moghadam, Zahra

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The Essentiality of Reporting Hardy-Weinberg Equilibrium Calculations in Population-Based Genetic Association Studies von Namipashaki, Atefeh, Razaghi-Moghadam, Zahra, Ansari-Pour, Naser

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CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks von Masoudi-Nejad, Ali, Ansariola, Mitra, Kashani, Zahra Razaghi Moghadam, Salehzadeh-Yazdi, Ali, Khakabimamaghani, Sahand

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Kavosh: a new algorithm for finding network motifs von Kashani, Zahra Razaghi Moghadam, Ahrabian, Hayedeh, Elahi, Elahe, Nowzari-Dalini, Abbas, Ansari, Elnaz Saberi, Asadi, Sahar, Mohammadi, Shahin, Schreiber, Falk, Masoudi-Nejad, Ali

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Cancerouspdomains: comprehensive analysis of cancer type-specific recurrent somatic mutations in proteins and domains von Hashemi, Seirana, Nowzari Dalini, Abbas, Jalali, Adrin, Banaei-Moghaddam, Ali Mohammad, Razaghi-Moghadam, Zahra

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Relative flux trade-offs and optimization of metabolic network functionalities von Hashemi, Seirana, Razaghi-Moghadam, Zahra, Laitinen, Roosa A.E., Nikoloski, Zoran

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Identification of the Crucial Residues in the Early Insertion of Pardaxin into Different Phospholipid Bilayers von Jafari, Majid, Mehrnejad, Faramarz, Aghdami, Raheleh, Chaparzadeh, Nader, Razaghi Moghadam Kashani, Zahra, Doustdar, Farahnoosh

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Combination of network and molecule structure accurately predicts competitive inhibitory interactions von Razaghi-Moghadam, Zahra, Sokolowska, Ewelina M., Sowa, Marcin A., Skirycz, Aleksandra, Nikoloski, Zoran

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Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli von Xu, Rudan, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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Prediction and integration of metabolite-protein interactions with genome-scale metabolic models von Habibpour, Mahdis, Razaghi-Moghadam, Zahra, Nikoloski, Zoran

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A systematic survey of centrality measures for protein-protein interaction networks von Ashtiani, Minoo, Salehzadeh-Yazdi, Ali, Razaghi-Moghadam, Zahra, Hennig, Holger, Wolkenhauer, Olaf, Mirzaie, Mehdi, Jafari, Mohieddin

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