Nonlinear observer output-feedback MPC treatment scheduling for HIV von Zurakowski, Ryan

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Using the Tools we Have: Low-efficacy Vaccines and HIV von Zurakowski, Ryan

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Episomal HIV-1 DNA and its relationship to other markers of HIV-1 persistence von Martinez-Picado, Javier, Zurakowski, Ryan, Buzón, María José, Stevenson, Mario

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HIV model parameter estimates from interruption trial data including drug efficacy and reservoir dynamics von Luo, Rutao, Piovoso, Michael J, Martinez-Picado, Javier, Zurakowski, Ryan

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Persistence of an intact HIV reservoir in phenotypically naive T cells von Venanzi Rullo, Emmanuele, Pinzone, Marilia Rita, Cannon, LaMont, Weissman, Sam, Ceccarelli, Manuela, Zurakowski, Ryan, Nunnari, Giuseppe, O'Doherty, Una

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HIV 2-LTR experiment design optimization von Cannon, LaMont, Vargas-Garcia, Cesar A, Jagarapu, Aditya, Piovoso, Michael J, Zurakowski, Ryan

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An Integrated Spatial Dynamics—Pharmacokinetic Model Explaining Poor Penetration of Anti-retroviral Drugs in Lymph Nodes von Jagarapu, Aditya, Piovoso, Michael J., Zurakowski, Ryan

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Naive infection predicts reservoir diversity and is a formidable hurdle to HIV eradication von Pinzone, Marilia R, Weissman, Sam, Pasternak, Alexander O, Zurakowski, Ryan, Migueles, Stephen, O'Doherty, Una

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Modeling Uncertainty in Single-Copy Assays for HIV von RUTAO LUO, PIOVOSO, Michael J, ZURAKOWSKI, Ryan

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Significant Unresolved Questions and Opportunities for Bioengineering in Understanding and Treating COVID-19 Disease Progression von Shirazi, Jasmine, Donzanti, Michael J., Nelson, Katherine M., Zurakowski, Ryan, Fromen, Catherine A., Gleghorn, Jason P.

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Optimal antiviral switching to minimize resistance risk in HIV therapy von Luo, Rutao, Piovoso, Michael J, Martinez-Picado, Javier, Zurakowski, Ryan

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The Tobit Kalman Filter: An Estimator for Censored Measurements von Allik, Bethany, Miller, Cory, Piovoso, Michael J., Zurakowski, Ryan

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Synaptic transmission may provide an evolutionary benefit to HIV through modulation of latency von Vargas-Garcia, Cesar, Zurakowski, Ryan, Singh, Abhyudai

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Ongoing HIV replication in lymph node sanctuary sites in treated individuals contributes to the total latent HIV at a very slow rate von Paryad-zanjani, Sasan, Jagarapu, Aditya, Piovoso, Michael J., Zurakowski, Ryan

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HIV-1 persistence in CD4+ T cells with stem cell–like properties von Buzon, Maria J, Sun, Hong, Li, Chun, Shaw, Amy, Seiss, Katherine, Ouyang, Zhengyu, Martin-Gayo, Enrique, Leng, Jin, Henrich, Timothy J, Li, Jonathan Z, Pereyra, Florencia, Zurakowski, Ryan, Walker, Bruce D, Rosenberg, Eric S, Yu, Xu G, Lichterfeld, Mathias

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Ballistic Roll Estimation using EKF Frequency Tracking and Adaptive Noise Cancellation von Allik, Bethany, Ilg, Mark, Zurakowski, Ryan

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Long-term antiretroviral treatment initiated at primary HIV-1 infection affects the size, composition, and decay kinetics of the reservoir of HIV-1-infected CD4 T cells von Buzon, Maria J, Martin-Gayo, Enrique, Pereyra, Florencia, Ouyang, Zhengyu, Sun, Hong, Li, Jonathan Z, Piovoso, Michael, Shaw, Amy, Dalmau, Judith, Zangger, Nadine, Martinez-Picado, Javier, Zurakowski, Ryan, Yu, Xu G, Telenti, Amalio, Walker, Bruce D, Rosenberg, Eric S, Lichterfeld, Mathias

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Next-Generation Sequencing in a Direct Model of HIV Infection Reveals Important Parallels to and Differences from In Vivo Reservoir Dynamics von Pinzone, Marilia Rita, Bertuccio, Maria Paola, VanBelzen, D Jake, Zurakowski, Ryan, O'Doherty, Una

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A model predictive control based scheduling method for HIV therapy von Zurakowski, Ryan, Teel, Andrew R.

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Ballistic Roll Estimation using EKF Frequency Tracking and Adaptive Noise Cancellation von Allik, Bethany, Ilg, Mark, Zurakowski, Ryan

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