Predicting the impact of non-coding variants on DNA methylation von Zeng, Haoyang, Gifford, David K

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Convolutional neural network architectures for predicting DNA-protein binding von Zeng, Haoyang, Edwards, Matthew D, Liu, Ge, Gifford, David K

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Network traffic anomaly detection model based on feature grouping and multi‐autoencoders integration von Zhou, Yang, Zeng, Haoyang, Zheng, Zhourong, Zhang, Wei

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Named entity recognition model based on Multi‐BiLSTM and competition mechanism von Zhou, Yang, Zeng, Haoyang, Zhang, Wei, Liu, Jiacheng

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Antibody complementarity determining region design using high-capacity machine learning von Liu, Ge, Zeng, Haoyang, Mueller, Jonas, Carter, Brandon, Wang, Ziheng, Schilz, Jonas, Horny, Geraldine, Birnbaum, Michael E, Ewert, Stefan, Gifford, David K

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Abundant contribution of short tandem repeats to gene expression variation in humans von Gymrek, Melissa, Willems, Thomas, Guilmatre, Audrey, Zeng, Haoyang, Markus, Barak, Georgiev, Stoyan, Daly, Mark J, Price, Alkes L, Pritchard, Jonathan K, Sharp, Andrew J, Erlich, Yaniv

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Visualizing complex feature interactions and feature sharing in genomic deep neural networks von Liu, Ge, Zeng, Haoyang, Gifford, David K

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Quantification of Uncertainty in Peptide-MHC Binding Prediction Improves High-Affinity Peptide Selection for Therapeutic Design von Zeng, Haoyang, Gifford, David K.

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Numerical Simulation Study of Seafloor Hydrothermal Circulation Based on HydrothermalFoam: A Case Study of the Wocan-1 Hydrothermal Field, Carlsberg Ridge, Indian Ocean von Zeng, Haoyang, Hu, Peng, He, Zhiguo, Yao, Jinrong, Yang, Zhiying

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Mining TCGA data using Boolean implications von Sinha, Subarna, Tsang, Emily K, Zeng, Haoyang, Meister, Michela, Dill, David L

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DeepLigand: accurate prediction of MHC class I ligands using peptide embedding von Zeng, Haoyang, Gifford, David K

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Anomaly detection for key performance indicators by fusing self-supervised spatio-temporal graph attention networks von Chen, Ningjiang, Tu, Huan, Zeng, Haoyang, Ou, Yangjie

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A preliminary exploration of waste red-bed as a supplementary cementitious material von Zhang, Ke, Zeng, Haoyang, Li, Na, Qi, Feifei, Tan, Yiyuan, Jiang, Laifeng, Zhang, Kai

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Turbulence correlation between moving trains and anemometer towers: Theoretical analysis, field measurements and simulation von Gao, Hongrui, Liu, Tanghong, Chen, Xiaodong, Zeng, Haoyang, Jiang, Jiyun, Wang, Xinran, Khoo, Boo Cheong

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A novel k -mer set memory (KSM) motif representation improves regulatory variant prediction von Guo, Yuchun, Tian, Kevin, Zeng, Haoyang, Guo, Xiaoyun, Gifford, David Kenneth

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Flow characteristics induced by a multiform windbreak in complex terrains with and without a train: A simplified method for calculating aerodynamic loads von Khoo, Boo Cheong

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An automated surgical decision-making framework for partial or radical nephrectomy based on 3D-CT multi-level anatomical features in renal cell carcinoma von Yang, Huancheng, Wu, Kai, Liu, Hanlin, Wu, Peng, Yuan, Yangguang, Wang, Lei, Liu, Yaru, Zeng, Haoyang, Li, Junkai, Liu, Weihao, Wu, Song

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GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding von Zeng, Haoyang, Hashimoto, Tatsunori, Kang, Daniel D, Gifford, David K

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Machine learning optimization of peptides for presentation by class II MHCs von Dai, Zheng, Huisman, Brooke D, Zeng, Haoyang, Carter, Brandon, Jain, Siddhartha, Birnbaum, Michael E, Gifford, David K

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A community computational challenge to predict the activity of pairs of compounds von Bansal, Mukesh, Yang, Jichen, Karan, Charles, Menden, Michael P, Costello, James C, Tang, Hao, Xiao, Guanghua, Li, Yajuan, Allen, Jeffrey, Zhong, Rui, Chen, Beibei, Kim, Minsoo, Wang, Tao, Heiser, Laura M, Realubit, Ronald, Mattioli, Michela, Alvarez, Mariano J, Shen, Yao, Gallahan, Daniel, Singer, Dinah, Saez-Rodriguez, Julio, Xie, Yang, Stolovitzky, Gustavo, Califano, Andrea

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