Extensive impact of non-antibiotic drugs on human gut bacteria von Maier, Lisa, Pruteanu, Mihaela, Kuhn, Michael, Zeller, Georg, Telzerow, Anja, Anderson, Exene Erin, Brochado, Ana Rita, Fernandez, Keith Conrad, Dose, Hitomi, Mori, Hirotada, Patil, Kiran Raosaheb, Bork, Peer, Typas, Athanasios

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Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox von Wirbel, Jakob, Zych, Konrad, Essex, Morgan, Karcher, Nicolai, Kartal, Ece, Salazar, Guillem, Bork, Peer, Sunagawa, Shinichi, Zeller, Georg

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Accurate and universal delineation of prokaryotic species von Mende, Daniel R, Sunagawa, Shinichi, Zeller, Georg, Bork, Peer

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Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO von Velten, Britta, Braunger, Jana M., Argelaguet, Ricard, Arnol, Damien, Wirbel, Jakob, Bredikhin, Danila, Zeller, Georg, Stegle, Oliver

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Biosynthetic potential of the global ocean microbiome von Paoli, Lucas, Ruscheweyh, Hans-Joachim, Forneris, Clarissa C., Hubrich, Florian, Kautsar, Satria, Bhushan, Agneya, Lotti, Alessandro, Clayssen, Quentin, Salazar, Guillem, Milanese, Alessio, Carlström, Charlotte I., Papadopoulou, Chrysa, Gehrig, Daniel, Karasikov, Mikhail, Mustafa, Harun, Larralde, Martin, Carroll, Laura M., Sánchez, Pablo, Zayed, Ahmed A., Cronin, Dylan R., Acinas, Silvia G., Bork, Peer, Bowler, Chris, Delmont, Tom O., Gasol, Josep M., Gossert, Alvar D., Kahles, André, Sullivan, Matthew B., Wincker, Patrick, Zeller, Georg, Robinson, Serina L., Piel, Jörn, Sunagawa, Shinichi

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Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing von Vogtmann, Emily, Hua, Xing, Zeller, Georg, Sunagawa, Shinichi, Voigt, Anita Y, Hercog, Rajna, Goedert, James J, Shi, Jianxin, Bork, Peer, Sinha, Rashmi

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Durable coexistence of donor and recipient strains after fecal microbiota transplantation von Li, Simone S., Zhu, Ana, Benes, Vladimir, Costea, Paul I., Hercog, Rajna, Hildebrand, Falk, Huerta-Cepas, Jaime, Nieuwdorp, Max, Salojärvi, Jarkko, Voigt, Anita Y., Zeller, Georg, Sunagawa, Shinichi, de Vos, Willem M., Bork, Peer

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Microbial abundance, activity and population genomic profiling with mOTUs2 von Milanese, Alessio, Mende, Daniel R, Paoli, Lucas, Salazar, Guillem, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Hingamp, Pascal, Alves, Renato, Costea, Paul I, Coelho, Luis Pedro, Schmidt, Thomas S. B., Almeida, Alexandre, Mitchell, Alex L, Finn, Robert D., Huerta-Cepas, Jaime, Bork, Peer, Zeller, Georg, Sunagawa, Shinichi

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Extensive transmission of microbes along the gastrointestinal tract von Schmidt, Thomas Sb, Hayward, Matthew R, Coelho, Luis P, Li, Simone S, Costea, Paul I, Voigt, Anita Y, Wirbel, Jakob, Maistrenko, Oleksandr M, Alves, Renato Jc, Bergsten, Emma, de Beaufort, Carine, Sobhani, Iradj, Heintz-Buschart, Anna, Sunagawa, Shinichi, Zeller, Georg, Wilmes, Paul, Bork, Peer

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MOCAT2: a metagenomic assembly, annotation and profiling framework von Kultima, Jens Roat, Coelho, Luis Pedro, Forslund, Kristoffer, Huerta-Cepas, Jaime, Li, Simone S, Driessen, Marja, Voigt, Anita Yvonne, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer

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A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies von Wirbel, Jakob, Essex, Morgan, Forslund, Sofia Kirke, Zeller, Georg

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Potential of fecal microbiota for early‐stage detection of colorectal cancer von Zeller, Georg, Tap, Julien, Voigt, Anita Y, Sunagawa, Shinichi, Kultima, Jens Roat, Costea, Paul I, Amiot, Aurélien, Böhm, Jürgen, Brunetti, Francesco, Habermann, Nina, Hercog, Rajna, Koch, Moritz, Luciani, Alain, Mende, Daniel R, Schneider, Martin A, Schrotz‐King, Petra, Tournigand, Christophe, Tran Van Nhieu, Jeanne, Yamada, Takuji, Zimmermann, Jürgen, Benes, Vladimir, Kloor, Matthias, Ulrich, Cornelia M, von Knebel Doeberitz, Magnus, Sobhani, Iradj, Bork, Peer

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Temporal and technical variability of human gut metagenomes von Voigt, Anita Y, Costea, Paul I, Kultima, Jens Roat, Li, Simone S, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer

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Subspecies in the global human gut microbiome von Costea, Paul I, Coelho, Luis Pedro, Sunagawa, Shinichi, Munch, Robin, Huerta‐Cepas, Jaime, Forslund, Kristoffer, Hildebrand, Falk, Kushugulova, Almagul, Zeller, Georg, Bork, Peer

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Metagenomic species profiling using universal phylogenetic marker genes von Sunagawa, Shinichi, Mende, Daniel R, Zeller, Georg, Izquierdo-Carrasco, Fernando, Berger, Simon A, Kultima, Jens Roat, Coelho, Luis Pedro, Arumugam, Manimozhiyan, Tap, Julien, Nielsen, Henrik Bjørn, Rasmussen, Simon, Brunak, Søren, Pedersen, Oluf, Guarner, Francisco, de Vos, Willem M, Wang, Jun, Li, Junhua, Doré, Joël, Ehrlich, S Dusko, Stamatakis, Alexandros, Bork, Peer

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Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations von Karcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D, Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H, Louis, Petra, Zolfo, Moreno, Manghi, Paolo, Valles-Colomer, Mireia, Raffaetà, Roberta, Rota-Stabelli, Omar, Collado, Maria Carmen, Zeller, Georg, Falush, Daniel, Maixner, Frank, Walker, Alan W, Huttenhower, Curtis, Segata, Nicola

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Prediction of drug combinations by integrating molecular and pharmacological data von Zhao, Xing-Ming, Iskar, Murat, Zeller, Georg, Kuhn, Michael, van Noort, Vera, Bork, Peer

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Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays von Zeller, Georg, Henz, Stefan R, Widmer, Christian K, Sachsenberg, Timo, Rätsch, Gunnar, Weigel, Detlef, Laubinger, Sascha

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Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community von Blasche, Sonja, Kim, Yongkyu, Mars, Ruben A. T., Machado, Daniel, Maansson, Maria, Kafkia, Eleni, Milanese, Alessio, Zeller, Georg, Teusink, Bas, Nielsen, Jens, Benes, Vladimir, Neves, Rute, Sauer, Uwe, Patil, Kiran Raosaheb

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Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana von Laubinger, Sascha, Sachsenberg, Timo, Zeller, Georg, Busch, Wolfgang, Lohmann, Jan U, Rätsch, Gunnar, Weigel, Detlef

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