Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression von Kishore, Shivendra, Luber, Sandra, Zavolan, Mihaela

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MirZ: an integrated microRNA expression atlas and target prediction resource von Hausser, Jean, Berninger, Philipp, Rodak, Christoph, Jantscher, Yvonne, Wirth, Stefan, Zavolan, Mihaela

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Cell-Type-Specific Signatures of MicroRNAs on Target mRNA Expression von Sood, Pranidhi, Krek, Azra, Zavolan, Mihaela, Macino, Giuseppe, Rajewsky, Nikolaus

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Virus-encoded microRNAs: novel regulators of gene expression von Nair, Venugopal, Zavolan, Mihaela

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A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing von Landgraf, Pablo, Rusu, Mirabela, Sheridan, Robert, Sewer, Alain, Iovino, Nicola, Aravin, Alexei, Pfeffer, Sébastien, Rice, Amanda, Kamphorst, Alice O., Landthaler, Markus, Lin, Carolina, Socci, Nicholas D., Hermida, Leandro, Fulci, Valerio, Chiaretti, Sabina, Foà, Robin, Schliwka, Julia, Fuchs, Uta, Novosel, Astrid, Müller, Roman-Ulrich, Schermer, Bernhard, Bissels, Ute, Inman, Jason, Phan, Quang, Chien, Minchen, Weir, David B., Choksi, Ruchi, De Vita, Gabriella, Frezzetti, Daniela, Trompeter, Hans-Ingo, Hornung, Veit, Teng, Grace, Hartmann, Gunther, Palkovits, Miklos, Di Lauro, Roberto, Wernet, Peter, Macino, Giuseppe, Rogler, Charles E., Nagle, James W., Ju, Jingyue, Papavasiliou, F. Nina, Benzing, Thomas, Lichter, Peter, Tam, Wayne, Brownstein, Michael J., Bosio, Andreas, Borkhardt, Arndt, Russo, James J., Sander, Chris, Zavolan, Mihaela, Tuschl, Thomas

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A novel class of small RNAs bind to MILI protein in mouse testes von Pfeffer, Sébastien, Nakano, Toru, Tuschl, Thomas, Iovino, Nicola, Chien, Minchen, Landgraf, Pablo, Lagos-Quintana, Mariana, Zavolan, Mihaela, Ju, Jingyue, Gaidatzis, Dimos, Morris, Patricia, Sheridan, Robert, Brownstein, Michael J, Sander, Chris, Aravin, Alexei, Russo, James J, Kuramochi-Miyagawa, Satomi

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Identification of Virus-Encoded MicroRNAs von Pfeffer, Sébastien, Zavolan, Mihaela, Grässer, Friedrich A., Chien, Minchen, Russo, James J., Ju, Jingyue, John, Bino, Enright, Anton J., Marks, Debora, Sander, Chris, Tuschl, Thomas

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Elevated Expression of the miR-17–92 Polycistron and miR-21 in Hepadnavirus-Associated Hepatocellular Carcinoma Contributes to the Malignant Phenotype von Connolly, Erin, Melegari, Margherita, Landgraf, Pablo, Tchaikovskaya, Tatyana, Tennant, Bud C, Slagle, Betty L, Rogler, Leslie E, Zavolan, Mihaela, Tuschl, Thomas, Rogler, Charles E

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Identification of microRNAs of the herpesvirus family von Zavolan, Mihaela, Tuschl, Thomas, Pfeffer, Sébastien, Sewer, Alain, Lagos-Quintana, Mariana, Sheridan, Robert, Sander, Chris, Grässer, Friedrich A, van Dyk, Linda F, Ho, C Kiong, Shuman, Stewart, Chien, Minchen, Russo, James J, Ju, Jingyue, Randall, Glenn, Lindenbach, Brett D, Rice, Charles M, Simon, Viviana, Ho, David D

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The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line von Suzuki, Harukazu, Forrest, Alistair R R, van Nimwegen, Erik, Daub, Carsten O, Balwierz, Piotr J, Irvine, Katharine M, Lassmann, Timo, Ravasi, Timothy, Hasegawa, Yuki, de Hoon, Michiel J L, Katayama, Shintaro, Schroder, Kate, Carninci, Piero, Tomaru, Yasuhiro, Kanamori-Katayama, Mutsumi, Kubosaki, Atsutaka, Akalin, Altuna, Ando, Yoshinari, Arner, Erik, Asada, Maki, Asahara, Hiroshi, Bailey, Timothy, Bajic, Vladimir B, Bauer, Denis, Beckhouse, Anthony G, Bertin, Nicolas, Björkegren, Johan, Brombacher, Frank, Bulger, Erika, Chalk, Alistair M, Chiba, Joe, Cloonan, Nicole, Dawe, Adam, Dostie, Josee, Engström, Pär G, Essack, Magbubah, Faulkner, Geoffrey J, Fink, J Lynn, Fredman, David, Fujimori, Ko, Furuno, Masaaki, Gojobori, Takashi, Gough, Julian, Grimmond, Sean M, Gustafsson, Mika, Hashimoto, Megumi, Hashimoto, Takehiro, Hatakeyama, Mariko, Heinzel, Susanne, Hide, Winston, Hofmann, Oliver, Hörnquist, Michael, Huminiecki, Lukasz, Ikeo, Kazuho, Imamoto, Naoko, Inoue, Satoshi, Inoue, Yusuke, Ishihara, Ryoko, Iwayanagi, Takao, Jacobsen, Anders, Kaur, Mandeep, Kawaji, Hideya, Kerr, Markus C, Kimura, Ryuichiro, Kimura, Syuhei, Kimura, Yasumasa, Kitano, Hiroaki, Koga, Hisashi, Kojima, Toshio, Kondo, Shinji, Konno, Takeshi, Krogh, Anders, Kruger, Adele, Kumar, Ajit, Lenhard, Boris, Lennartsson, Andreas, Lindow, Morten, Lizio, Marina, Macpherson, Cameron, Maeda, Norihiro, Maher, Christopher A, Maqungo, Monique, Mar, Jessica, Matigian, Nicholas A, Matsuda, Hideo, Mattick, John S, Meier, Stuart, Miyamoto, Sei, Miyamoto-Sato, Etsuko, Nakabayashi, Kazuhiko, Nakachi, Yutaka, Nakano, Mika, Nygaard, Sanne, Okayama, Toshitsugu, Okazaki, Yasushi, Okuda-Yabukami, Haruka, Orlando, Valerio, Otomo, Jun, Pachkov, Mikhail, Petrovsky, Nikolai

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Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs von Chern, Tzu-Ming, Paul, Nicodeme, van Nimwegen, Erik, Zavolan, Mihaela

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Identification of clustered microRNAs using an ab initio prediction method von Sewer, Alain, Paul, Nicodème, Landgraf, Pablo, Aravin, Alexei, Pfeffer, Sébastien, Brownstein, Michael J, Tuschl, Thomas, van Nimwegen, Erik, Zavolan, Mihaela

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The developmental miRNA profiles of zebrafish as determined by small RNA cloning von Chen, Po Yu, Manninga, Heiko, Slanchev, Krasimir, Chien, Minchen, Russo, James J, Ju, Jingyue, Sheridan, Robert, John, Bino, Marks, Debora S, Gaidatzis, Dimos, Sander, Chris, Zavolan, Mihaela, Tuschl, Thomas

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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs von Okazaki, Y, Furuno, M, Kasukawa, T, Adachi, J, Bono, H, Kondo, S, Nikaido, I, Osato, N, Saito, R, Suzuki, H, Yamanaka, I, Kiyosawa, H, Yagi, K, Tomaru, Y, Hasegawa, Y, Nogami, A, Schönbach, C, Gojobori, T, Baldarelli, R, Hill, D P, Bult, C, Hume, D A, Quackenbush, J, Schriml, L M, Kanapin, A, Matsuda, H, Batalov, S, Beisel, K W, Blake, J A, Bradt, D, Brusic, V, Chothia, C, Corbani, L E, Cousins, S, Dalla, E, Dragani, T A, Fletcher, C F, Forrest, A, Frazer, K S, Gaasterland, T, Gariboldi, M, Gissi, C, Godzik, A, Gough, J, Grimmond, S, Gustincich, S, Hirokawa, N, Jackson, I J, Jarvis, E D, Kanai, A, Kawaji, H, Kawasawa, Y, Kedzierski, R M, King, B L, Konagaya, A, Kurochkin, I V, Lee, Y, Lenhard, B, Lyons, P A, Maglott, D R, Maltais, L, Marchionni, L, McKenzie, L, Miki, H, Nagashima, T, Numata, K, Okido, T, Pavan, W J, Pertea, G, Pesole, G, Petrovsky, N, Pillai, R, Pontius, J U, Qi, D, Ramachandran, S, Ravasi, T, Reed, J C, Reed, D J, Reid, J, Ring, B Z, Ringwald, M, Sandelin, A, Schneider, C, Semple, C A M, Setou, M, Shimada, K, Sultana, R, Takenaka, Y, Taylor, M S, Teasdale, R D, Tomita, M, Verardo, R, Wagner, L, Wahlestedt, C, Wang, Y, Watanabe, Y, Wells, C, Wilming, L G, Wynshaw-Boris, A, Yanagisawa, M

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Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome von Ravasi, Timothy, Huber, Thomas, Zavolan, Mihaela, Forrest, Alistair, Gaasterland, Terry, Grimmond, Sean, Hume, David A

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Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome von Zavolan, Mihaela, van Nimwegen, Erik, Gaasterland, Terry

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Probabilistic Clustering of Sequences: Inferring New Bacterial Regulons by Comparative Genomics von van Nimwegen, Erik, Zavolan, Mihaela, Rajewsky, Nikolaus, Siggia, Eric D.

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Statistical inference of sequence-dependent mutation rates von Zavolan, Mihaela, Kepler, Thomas B.

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Analysis of Human Immunodeficiency Virus Cytopathicity by Using a New Method for Quantitating Viral Dynamics in Cell Culture von SPEIRS, Christina, VAN NIMWEGEN, Erik, BOLTON, Diane, ZAVOLAN, Mihaela, DUVALL, Melody, ANGLEMAN, Sara, SIEGEL, Richard, PERELSON, Alan S, LENARDO, Michael J

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The Transcriptional Landscape of the Mammalian Genome: The FANTOM Consortium von Carninci, P, Kasukawa, T, Katayama, S, Gough, J, Frith, M C, Maeda, N, Oyama, R, Ravasi, T, Lenhard, B, Wells, C, Kodzius, R, Shimokawa, K, Bajic, V B, Brenner, SE, Batalov, S, rest, ARR, Zavolan, M, Davis, MJ, Wilming, L G, Aidinis, V, Allen, JE, Ambesi-Impiombato, A, Apweiler, R, Aturaliya, R N, Bailey, T L, Bansal, M, Baxter, L, Beisel, K W, Bersano, T, Bono, H, Chalk, A M, Chiu, K P, Choudhary, V, Christoffels, A, Clutterbuck, DR, Crowe, M L, Dalla, E, Dalrymple, B P

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