A new strategy to reduce allelic bias in RNA-Seq readmapping von Satya, Ravi Vijaya, Zavaljevski, Nela, Reifman, Jaques

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Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions von Wallqvist, Anders, Wang, Hao, Zavaljevski, Nela, Memišević, Vesna, Kwon, Keehwan, Pieper, Rembert, Rajagopala, Seesandra V, Reifman, Jaques

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Composition and variation of respiratory microbiota in healthy military personnel von Hang, Jun, Zavaljevski, Nela, Yang, Yu, Desai, Valmik, Ruck, Richard C, Macareo, Louis R, Jarman, Richard G, Reifman, Jaques, Kuschner, Robert A, Keiser, Paul B

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Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms von Memišević, Vesna, Zavaljevski, Nela, Rajagopala, Seesandra V, Kwon, Keehwan, Pieper, Rembert, DeShazer, David, Reifman, Jaques, Wallqvist, Anders

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16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles von Hang, Jun, Desai, Valmik, Zavaljevski, Nela, Yang, Yu, Lin, Xiaoxu, Satya, Ravi Vijaya, Martinez, Luis J, Blaylock, Jason M, Jarman, Richard G, Thomas, Stephen J, Kuschner, Robert A

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A high-throughput pipeline for the design of real-time PCR signatures von Vijaya Satya, Ravi, Kumar, Kamal, Zavaljevski, Nela, Reifman, Jaques

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AGeS: a software system for microbial genome sequence annotation von Kumar, Kamal, Desai, Valmik, Cheng, Li, Khitrov, Maxim, Grover, Deepak, Satya, Ravi Vijaya, Yu, Chenggang, Zavaljevski, Nela, Reifman, Jaques

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A high-throughput pipeline for designing microarray-based pathogen diagnostic assays von Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Reifman, Jaques

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The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation von Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Johnson, Seth, Stevens, Fred J, Reifman, Jaques

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PSPP: a protein structure prediction pipeline for computing clusters von Lee, Michael S, Bondugula, Rajkumar, Desai, Valmik, Zavaljevski, Nela, Yeh, In-Chul, Wallqvist, Anders, Reifman, Jaques

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In silico microarray probe design for diagnosis of multiple pathogens von Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Bode, Elizabeth, Padilla, Susana, Wasieloski, Leonard, Geyer, Jeanne, Reifman, Jaques

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Genome-wide enzyme annotation with precision control: Catalytic families (CatFam) databases von Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Reifman, Jaques

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QuartetS: a fast and accurate algorithm for large-scale orthology detection von Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Reifman, Jaques

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DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems von Memišević, Vesna, Kumar, Kamal, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques

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DBSecSys: a database of Burkholderia mallei secretion systems von Memišević, Vesna, Kumar, Kamal, Cheng, Li, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques

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Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors von Wallqvist, Anders, Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V, Kwon, Keehwan, Yu, Chenggang, Hoover, Timothy A, Reifman, Jaques

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Novel Burkholderia mallei Virulence Factors Linked to Specific Host-Pathogen Protein Interactions von Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V., Kwon, Keehwan, Townsend, Katherine, Yu, Chenggang, Yu, Xueping, DeShazer, David, Reifman, Jaques, Wallqvist, Anders

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Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms: e1004088 von Memisevic, Vesna, Zavaljevski, Nela, Rajagopala, Seesandra V, Kwon, Keehwan, Pieper, Rembert, DeShazer, David, Reifman, Jaques, Wallqvist, Anders

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DBSecSys: a database of Burkholderia malleisecretion systems von MemiÅ¡eviÄ, Vesna, Kumar, Kamal, Cheng, Li, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques

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Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions von ZAVALJEVSKI, Nela, STEVENS, Fred J, REIFMAN, Jacques

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