TiGER: a database for tissue-specific gene expression and regulation von Liu, Xiong, Yu, Xueping, Zack, Donald J, Zhu, Heng, Qian, Jiang

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TNFα-Mediated Priming of Mesenchymal Stem Cells Enhances Their Neuroprotective Effect on Retinal Ganglion Cells von Mead, Ben, Chamling, Xitiz, Zack, Donald J, Ahmed, Zubair, Tomarev, Stanislav

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Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation von Wan, Jun, Oliver, Verity F, Wang, Guohua, Zhu, Heng, Zack, Donald J, Merbs, Shannath L, Qian, Jiang

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Thyroid hormone signaling specifies cone subtypes in human retinal organoids von Eldred, Kiara C, Hadyniak, Sarah E, Hussey, Katarzyna A, Brenerman, Boris, Zhang, Ping-Wu, Chamling, Xitiz, Sluch, Valentin M, Welsbie, Derek S, Hattar, Samer, Taylor, James, Wahlin, Karl, Zack, Donald J, Johnston, Jr, Robert J

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Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines von Capowski, Elizabeth E, Samimi, Kayvan, Mayerl, Steven J, Phillips, M Joseph, Pinilla, Isabel, Howden, Sara E, Saha, Jishnu, Jansen, Alex D, Edwards, Kimberly L, Jager, Lindsey D, Barlow, Katherine, Valiauga, Rasa, Erlichman, Zachary, Hagstrom, Anna, Sinha, Divya, Sluch, Valentin M, Chamling, Xitiz, Zack, Donald J, Skala, Melissa C, Gamm, David M

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Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells von Wahlin, Karl J., Maruotti, Julien A., Sripathi, Srinivasa R., Ball, John, Angueyra, Juan M., Kim, Catherine, Grebe, Rhonda, Li, Wei, Jones, Bryan W., Zack, Donald J.

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We Shall See? von Sebastiano, Vittorio, Zack, Donald J

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Aquaporin 4 is not present in normal porcine and human lamina cribrosa von Kimball, Elizabeth C, Quillen, Sarah, Pease, Mary E, Keuthan, Casey, Nagalingam, Aru, Zack, Donald J, Johnson, Thomas V, Quigley, Harry A

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ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration von Wang, Jie, Zibetti, Cristina, Shang, Peng, Sripathi, Srinivasa R., Zhang, Pingwu, Cano, Marisol, Hoang, Thanh, Xia, Shuli, Ji, Hongkai, Merbs, Shannath L., Zack, Donald J., Handa, James T., Sinha, Debasish, Blackshaw, Seth, Qian, Jiang

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Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells von Fligor, Clarisse M., Langer, Kirstin B., Sridhar, Akshayalakshmi, Ren, Yuan, Shields, Priya K., Edler, Michael C., Ohlemacher, Sarah K., Sluch, Valentin M., Zack, Donald J., Zhang, Chi, Suter, Daniel M., Meyer, Jason S.

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The Potential of Human Stem Cells for the Study and Treatment of Glaucoma von Chamling, Xitiz, Sluch, Valentin M, Zack, Donald J

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Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development von Lu, Yufeng, Shiau, Fion, Yi, Wenyang, Lu, Suying, Wu, Qian, Pearson, Joel D., Kallman, Alyssa, Zhong, Suijuan, Hoang, Thanh, Zuo, Zhentao, Zhao, Fangqi, Zhang, Mei, Tsai, Nicole, Zhuo, Yan, He, Sheng, Zhang, Jun, Stein-O’Brien, Genevieve L., Sherman, Thomas D., Duan, Xin, Fertig, Elana J., Goff, Loyal A., Zack, Donald J., Handa, James T., Xue, Tian, Bremner, Rod, Blackshaw, Seth, Wang, Xiaoqun, Clark, Brian S.

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PanoView: An iterative clustering method for single-cell RNA sequencing data von Hu, Ming-Wen, Kim, Dong Won, Liu, Sheng, Zack, Donald J, Blackshaw, Seth, Qian, Jiang

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Cornea organoids from human induced pluripotent stem cells von Foster, James W., Wahlin, Karl, Adams, Sheila M., Birk, David E., Zack, Donald J., Chakravarti, Shukti

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Expansion of the CRISPR–Cas9 genome targeting space through the use of H1 promoter-expressed guide RNAs von Ranganathan, Vinod, Wahlin, Karl, Maruotti, Julien, Zack, Donald J.

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Quantitative fate mapping: A general framework for analyzing progenitor state dynamics via retrospective lineage barcoding von Fang, Weixiang, Bell, Claire M., Sapirstein, Abel, Asami, Soichiro, Leeper, Kathleen, Zack, Donald J., Ji, Hongkai, Kalhor, Reza

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Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells von Chamling, Xitiz, Kallman, Alyssa, Fang, Weixiang, Berlinicke, Cynthia A., Mertz, Joseph L., Devkota, Prajwal, Pantoja, Itzy E. Morales, Smith, Matthew D., Ji, Zhicheng, Chang, Calvin, Kaushik, Aniruddha, Chen, Liben, Whartenby, Katharine A., Calabresi, Peter A., Mao, Hai-Quan, Ji, Hongkai, Wang, Tza-Huei, Zack, Donald J.

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Enhanced Functional Genomic Screening Identifies Novel Mediators of Dual Leucine Zipper Kinase-Dependent Injury Signaling in Neurons von Welsbie, Derek S., Mitchell, Katherine L., Jaskula-Ranga, Vinod, Sluch, Valentin M., Yang, Zhiyong, Kim, Jessica, Buehler, Eugen, Patel, Amit, Martin, Scott E., Zhang, Ping-Wu, Ge, Yan, Duan, Yukan, Fuller, John, Kim, Byung-Jin, Hamed, Eman, Chamling, Xitiz, Lei, Lei, Fraser, Iain D.C., Ronai, Ze’ev A., Berlinicke, Cynthia A., Zack, Donald J.

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High-throughput and high-content bioassay enables tuning of polyester nanoparticles for cellular uptake, endosomal escape, and systemic in vivo delivery of mRNA von Rui, Yuan, Wilson, David R, Tzeng, Stephany Y, Yamagata, Hannah M, Sudhakar, Deepti, Conge, Marranne, Berlinicke, Cynthia A, Zack, Donald J, Tuesca, Anthony, Green, Jordan J

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A rare penetrant mutation in CFH confers high risk of age-related macular degeneration von Raychaudhuri, Soumya, Iartchouk, Oleg, Chin, Kimberly, Tan, Perciliz L, Tai, Albert K, Ripke, Stephan, Gowrisankar, Sivakumar, Vemuri, Soumya, Montgomery, Kate, Yu, Yi, Reynolds, Robyn, Zack, Donald J, Campochiaro, Betsy, Campochiaro, Peter, Katsanis, Nicholas, Daly, Mark J, Seddon, Johanna M

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